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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68479
CDX68481
CDX73637
CDX78091
CDX83034
CDX83035
CDX90603
CDY23217
CDY29081
CDY44979
CDY67344
CDY68128
CDY68190
CDY69054

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G48090.1 CDX68479 AT3G48090.1 11574472
AT3G48090.1 CDX68481 AT3G48090.1 11574472
AT3G48090.1 CDX83034 AT3G48090.1 11574472
AT3G48090.1 CDX83035 AT3G48090.1 11574472
AT3G48090.1 CDY44979 AT3G48090.1 11574472
AT3G48090.1 CDY68128 AT3G48090.1 11574472
AT3G48090.1 CDX73637 AT3G52430.1 11574472
AT3G48090.1 CDX78091 AT3G52430.1 11574472
AT3G48090.1 CDX90603 AT3G52430.1 11574472
AT3G48090.1 CDY23217 AT3G52430.1 11574472
AT3G48090.1 CDY29081 AT3G52430.1 11574472
AT3G48090.1 CDY67344 AT3G52430.1 11574472
AT3G48090.1 CDY68190 AT3G52430.1 11574472
AT3G48090.1 CDY69054 AT3G52430.1 11574472
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra018085.1-P Field mustard cytosol 95.5 95.5
CDY44979 Canola cytosol 92.5 92.5
CDX83034 Canola cytosol, extracellular, plastid 63.17 72.05
CDX68479 Canola cytosol, extracellular, plastid 62.0 70.72
CDX83035 Canola cytosol 59.83 61.9
CDX68481 Canola cytosol 50.0 59.41
AT3G48080.1 Thale cress cytosol 60.83 58.03
AT3G48090.1 Thale cress cytosol 59.83 57.62
PGSC0003DMT400083030 Potato cytosol 37.83 38.8
Solyc06g071280.2.1 Tomato cytosol 37.5 37.38
VIT_17s0000g07560.t01 Wine grape cytosol 37.0 37.25
KRH63455 Soybean cytosol 37.33 36.6
KRH54465 Soybean cytosol 35.83 34.96
KRH54468 Soybean cytosol 35.83 34.85
KRH54464 Soybean cytosol, endoplasmic reticulum 35.5 34.35
VIT_17s0000g07370.t01 Wine grape cytosol 34.0 34.0
Os09t0392100-01 Rice cytosol, nucleus, peroxisome, plastid 34.83 33.66
GSMUA_Achr8P25290_001 Banana plastid 35.67 33.28
KXG35573 Sorghum cytosol, nucleus, peroxisome 33.83 33.17
TraesCS5B01G200800.2 Wheat cytosol, nucleus, peroxisome, plastid 32.17 32.94
TraesCS5D01G208600.1 Wheat plastid 33.83 32.58
TraesCS5A01G202200.2 Wheat cytosol, nucleus, peroxisome, plastid 33.83 32.53
Zm00001d005708_P001 Maize cytosol, nucleus, peroxisome, plastid 33.33 32.31
VIT_17s0000g07420.t01 Wine grape cytosol 34.0 32.03
HORVU5Hr1G060060.2 Barley plastid 34.33 31.12
CDY67344 Canola plastid 18.0 25.12
CDY23217 Canola plastid 17.0 23.72
CDY69054 Canola cytosol 16.83 22.85
VIT_17s0000g07400.t01 Wine grape plastid 25.5 22.84
CDX70584 Canola cytosol 20.0 22.81
CDY09901 Canola cytosol, endoplasmic reticulum, nucleus 14.0 21.88
CDY68190 Canola cytosol 11.5 21.77
CDX70582 Canola cytosol 18.17 21.0
CDY29081 Canola cytosol, endoplasmic reticulum, peroxisome 19.17 20.95
CDX70581 Canola cytosol 18.33 20.91
CDX78601 Canola nucleus 17.33 20.72
CDX78600 Canola extracellular 18.33 20.6
CDX78091 Canola cytosol, nucleus, peroxisome 18.5 20.29
CDX73637 Canola cytosol, nucleus, peroxisome 18.5 20.26
CDY09899 Canola extracellular, vacuole 18.0 19.93
CDY69990 Canola endoplasmic reticulum 18.17 19.22
CDX90603 Canola plasma membrane 19.0 18.1
CDY29080 Canola extracellular 1.67 14.29
CDY00844 Canola extracellular 1.5 13.85
Protein Annotations
EnsemblPlants:CDY68128EnsemblPlantsGene:GSBRNA2T00069939001Gene3D:3.40.50.1820GO:A0A078JKU0GO:GO:0003674GO:GO:0003824
GO:GO:0006629GO:GO:0008150GO:GO:0008152GO:GO:0016787InterPro:AB_hydrolaseInterPro:Fungal_lipase-like
InterPro:IPR029058PANTHER:PTHR21493PANTHER:PTHR21493:SF94PFAM:PF01764ProteinID:CDY68128ProteinID:CDY68128.1
SEG:segSUPFAM:SSF53474UniParc:UPI0004EF46F0UniProt:A0A078JKU0MapMan:26.8.2.4.1:
Description
BnaAnng26220DBnaAnng26220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JKU0]
Coordinates
chrLK036888:-:1155..3575
Molecular Weight (calculated)
68725.5 Da
IEP (calculated)
6.596
GRAVY (calculated)
-0.469
Length
600 amino acids
Sequence
(BLAST)
001: MALEALAGIS NDLITRAWMA STRAYNTDHF HKEEERETVF VAVRPSFLEK DWFAPENKSP FGETNMKRAQ FPCMRSIGND VDATVNESFL ENFQVLTSPT
101: TSFCDYVKTV VDSRQSQRIV FTGHSTGGAT AILATVWYLE TYFKKPRGGF PLPEPLCMTF GAPLVGDYVF KHALGRENWS RFFVNFVTRF DIVPRIMLAG
201: KESTKQALPH VLSQLDPRVA IQENDQSIPG FYTTVMKETA TVAHQAVCEL IGYGDAFLET FSSFLDLSPY RPAGIFVFST GTGLVSVSNS DAILQILFYA
301: SQSSNQHELS LVPFQSIKDH RSYEEMVHSM AMKPLNHLDL HHLPLDGDPI LRDLGLSTRA RQCVCAAFEA EKQRVDNQTK IYNKLPKIVE KLTWIEDEYK
401: PRCKTHKNGY YDSFKYSNEE KDFKANVSRA ELAGLFDEVL GLVKKGLLPD GFEGHREWIE LSTRYRILIE PLDISNYHRH LKNEDTGPYM RKGRPNRYKH
501: AQRGYEHELL KAGKSAEEIK ESGCGSCFWA DVEELKGKAY ESVEVKRFEK LVEGWITDRE IDDEQIFLEG STFRKWWHSL PEEHKRSSLL RERMGETRST
Best Arabidopsis Sequence Match ( AT3G48080.1 )
(BLAST)
001: MAFEALTGVN GDLVTISWMA SKGANQTEHY LKEEVGGTVF FAFRASFSSE DLFATENTSP FGEIKMKRNQ FPCMRSIGND VDTTVNEAFL KSLEVLIGPR
101: TSFHASVQSA VDRKQQVVFT GHSFGGATAI LATVWYLETY FIRDAYAAPE PRCVTFGAPL VGDYIFKHAL GRENWSRFFV NFVTRFDIVP RIMLARKTTI
201: EQTLSYVLGK LDSTRAPIHE SDQVITEFYT RVMRDTYTVA SKAVCQLIGN GEAFLETLSS FYELSPYRPV GTFVFSTQKR LVVVNNSDAI LQMLFYTCQS
301: NDEQELSVIP FLSIRDHHGY EELVQSIGIK LLNHLDLHNP LLDGENSIGS ALDDLGMSTR ARQCIHAALE AEKQRVENQK KIETKRDQIV ERLTWIVEVY
401: KPKCQAHKNG YYDSFKDSNE ENDFKANVKR VELAGIFDEV LGLVKKGQLP DGFEGSRGWI NLATQYRRLI EPLDISNYHG QLKNEDTGPY MLHGRPSRYK
501: YAQRGYEHDI LKPTGMIAKD VFWSKVNGLN LGLQQDIQEI LKNSGSECGS CFWAEVEELK GKPYEEVQVR FKTLEGLLEG WIKDGEVDEK EIFLEGSTFR
601: KWWNTLPDSH KIHAPLYPRE RMMDETRAT
Arabidopsis Description
EDS1BProtein EDS1B [Source:UniProtKB/Swiss-Prot;Acc:Q9SU71]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.