CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68479
CDX68481
CDX83034
CDX83035
CDY44979
CDY68128

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52430.1	CDX68479	AT3G48090.1	11574472
AT3G52430.1	CDX68481	AT3G48090.1	11574472
AT3G52430.1	CDX83034	AT3G48090.1	11574472
AT3G52430.1	CDX83035	AT3G48090.1	11574472
AT3G52430.1	CDY44979	AT3G48090.1	11574472
AT3G52430.1	CDY68128	AT3G48090.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78091	Canola	cytosol, nucleus, peroxisome	95.8	95.98
CDY69054	Canola	cytosol	68.43	84.84
CDY68190	Canola	cytosol	46.53	80.44
CDY23217	Canola	plastid	59.85	76.28
CDY67344	Canola	plastid	58.94	75.12
CDY29081	Canola	cytosol, endoplasmic reticulum, peroxisome	72.63	72.5
AT3G52430.1	Thale cress	cytosol, nucleus, peroxisome	64.42	65.25
CDX90603	Canola	plasma membrane	74.09	64.44
VIT_07s0031g02390.t01	Wine grape	cytosol	42.52	37.64
PGSC0003DMT400051170	Potato	cytosol	39.05	37.02
KRH53943	Soybean	cytosol, nucleus, peroxisome	42.34	36.65
KRH63997	Soybean	cytosol, nucleus, peroxisome	41.42	35.86
Solyc02g032850.2.1	Tomato	cytosol	37.41	35.47
KRH40959	Soybean	cytosol	40.69	35.23
KRH59603	Soybean	plastid	32.85	34.42
GSMUA_Achr6P12900_001	Banana	cytosol	35.4	32.17
GSMUA_Achr2P20660_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	35.4	31.8
Zm00001d004706_P002	Maize	cytosol, peroxisome, plastid	35.77	30.11
Zm00001d053138_P002	Maize	cytosol, peroxisome, plastid	35.04	29.14
EES08158	Sorghum	cytosol, peroxisome, plastid	35.58	29.1
TraesCS4B01G100100.1	Wheat	peroxisome	33.94	28.53
TraesCS4D01G096400.2	Wheat	peroxisome	33.94	28.53
TraesCS4A01G216100.1	Wheat	peroxisome	33.58	28.26
Os11t0195500-01	Rice	mitochondrion	26.82	27.48
HORVU4Hr1G043530.1	Barley	mitochondrion	34.12	26.56
CDX70581	Canola	cytosol	22.45	23.38
CDY09901	Canola	cytosol, endoplasmic reticulum, nucleus	16.06	22.92
CDX78600	Canola	extracellular	21.9	22.47
CDX70584	Canola	cytosol	21.53	22.43
CDY09899	Canola	extracellular, vacuole	21.72	21.96
CDX70582	Canola	cytosol	20.44	21.58
CDY00844	Canola	extracellular	2.55	21.54
CDY69990	Canola	endoplasmic reticulum	21.9	21.16
CDX78601	Canola	nucleus	18.61	20.32
CDX68479	Canola	cytosol, extracellular, plastid	18.8	19.58
CDX83034	Canola	cytosol, extracellular, plastid	18.43	19.2
CDY44979	Canola	cytosol	20.62	18.83
CDX83035	Canola	cytosol	19.71	18.62
CDY68128	Canola	cytosol	20.26	18.5
CDY29080	Canola	extracellular	2.19	17.14
CDX68481	Canola	cytosol	15.51	16.83

Protein Annotations

EnsemblPlants:CDX73637	EnsemblPlantsGene:GSBRNA2T00109208001	Gene3D:3.40.50.1820	GO:A0A078C9V6	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	InterPro:AB_hydrolase	InterPro:Fungal_lipase-like	InterPro:IPR029058	ncoils:Coil	PANTHER:PTHR21493
PANTHER:PTHR21493:SF130	PFAM:PF01764	ProteinID:CDX73637	ProteinID:CDX73637.1	SEG:seg	SUPFAM:SSF53474
UniParc:UPI0004EEA892	MapMan:26.8.2.4.2	:	:	:	:

Description

BnaC08g23660D

Coordinates

chrLK031799:-:1836660..1841949

Molecular Weight (calculated)

61770.4 Da

IEP (calculated)

6.930

GRAVY (calculated)

-0.306

Length

548 amino acids

Sequence
(BLAST)

001: MEECRFETSE LQASFMMSTP LWSNSWILCI AADSAGNIQI QHVAGIMYVA LPKVEMNQPG NLVDLEVVGD GLFSALSSSL PSGEPPLMVN GAIRDLFVSS
101: GRLIQSQITQ GLEVEETKQV VITGHSTGGA LAALTALWLL SQPSPPPFRL LCISFGSPLL GNLSFSSSVS RSRLAHKFCH VVSVHDHVPR GNDDRFWPFG
201: TYLFCSDSGG LCLDNADSVR GMFRILNSTG TPNIEEHQRY GHYVSTLSHQ FLISRSFRGG RISDNSYEAG GALAVESLGF SNDQPSGVSV KECIETATTI
301: SRAPILRSSE LAIELGNVVP YRLEIQWYKD SCEASPKKLG YYDNFKNFSN QRELRVNMSR AKLAKFWDGV FEMVEMNELP FDFHLGKKWV YASQFYQLLA
401: EPLDIAYFYK YTYSRTTGHY MKSGNRPKRY EVIDKWWKAR GEPHKEKRAR TRYASTTQDT CFWAKLEEAK ECLDDLTCES SDAQKQTLLW KKIYEFERYS
501: ATLVKMKEVS KDVLATNSSY TVWVEKLREF NKLKVSNGVV DKSDAMET

Best Arabidopsis Sequence Match ( AT3G52430.1 )
(BLAST)

001: MDDCRFETSE LQASVMISTP LFTDSWSSCN TANCNGSIKI HDIAGITYVA IPAVSMIQLG NLVGLPVTGD VLFPGLSSDE PLPMVDAAIL KLFLQLKIKE
101: GLELELLGKK LVVITGHSTG GALAAFTALW LLSQSSPPSF RVFCITFGSP LLGNQSLSTS ISRSRLAHNF CHVVSIHDLV PRSSNEQFWP FGTYLFCSDK
201: GGVCLDNAGS VRLMFNILNT TATQNTEEHQ RYGHYVFTLS HMFLKSRSFL GGSIPDNSYQ AGVALAVEAL GFSNDDTSGV LVKECIETAT RIVRAPILRS
301: AELANELASV LPARLEIQWY KDRCDASEEQ LGYYDFFKRY SLKRDFKVNM SRIRLAKFWD TVIKMVETNE LPFDFHLGKK WIYASQFYQL LAEPLDIANF
401: YKNRDIKTGG HYLEGNRPKR YEVIDKWQKG VKVPEECVRS RYASTTQDTC FWAKLEQAKE WLDEARKESS DPQRRSLLRE KIVPFESYAN TLVTKKEVSL
501: DVKAKNSSYS VWEANLKEFK CKMGYENEIE MVVDESDAME T

Arabidopsis Description

PAD4Lipase-like PAD4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S745]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.