CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, peroxisome, plastid
BaCelLo:	nucleus
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH54464
KRH54465
KRH54468
KRH63455

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52430.1	KRH54464	AT3G48090.1	11574472
AT3G52430.1	KRH54465	AT3G48090.1	11574472
AT3G52430.1	KRH54468	AT3G48090.1	11574472
AT3G52430.1	KRH63455	AT3G48090.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40959	Soybean	cytosol	85.47	70.62
KRH53943	Soybean	cytosol, nucleus, peroxisome	65.97	54.5
KRH63997	Soybean	cytosol, nucleus, peroxisome	64.44	53.24
VIT_07s0031g02390.t01	Wine grape	cytosol	50.67	42.81
PGSC0003DMT400051170	Potato	cytosol	43.02	38.93
Solyc02g032850.2.1	Tomato	cytosol	41.68	37.72
CDX73637	Canola	cytosol, nucleus, peroxisome	34.42	32.85
Bra006922.1-P	Field mustard	cytosol, nucleus, peroxisome	33.84	32.36
CDY67344	Canola	plastid	26.58	32.33
CDX78091	Canola	cytosol, nucleus, peroxisome	33.65	32.18
CDY23217	Canola	plastid	26.39	32.09
Bra033431.1-P	Field mustard	plastid	26.39	32.09
CDY29081	Canola	cytosol, endoplasmic reticulum, peroxisome	33.27	31.69
AT3G52430.1	Thale cress	cytosol, nucleus, peroxisome	32.5	31.42
Os11t0195500-01	Rice	mitochondrion	31.93	31.21
CDY69054	Canola	cytosol	26.0	30.77
GSMUA_Achr6P12900_001	Banana	cytosol	35.37	30.68
GSMUA_Achr2P20660_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	34.8	29.84
Zm00001d004706_P002	Maize	cytosol, peroxisome, plastid	35.95	28.88
EES08158	Sorghum	cytosol, peroxisome, plastid	36.71	28.66
Zm00001d053138_P002	Maize	cytosol, peroxisome, plastid	35.95	28.53
CDY68190	Canola	cytosol	17.02	28.08
TraesCS4B01G100100.1	Wheat	peroxisome	34.99	28.07
CDX90603	Canola	plasma membrane	33.46	27.78
TraesCS4D01G096400.2	Wheat	peroxisome	34.61	27.76
Bra012805.1-P	Field mustard	plasma membrane	33.27	27.62
TraesCS4A01G216100.1	Wheat	peroxisome	34.03	27.34
HORVU4Hr1G043530.1	Barley	mitochondrion	34.23	25.43
KRH63455	Soybean	cytosol	23.14	19.77
KRH54468	Soybean	cytosol	22.56	19.12
KRH54465	Soybean	cytosol	21.61	18.37
KRG93399	Soybean	plastid	19.31	17.21
KRH54464	Soybean	cytosol, endoplasmic reticulum	20.27	17.1
KRH18587	Soybean	endoplasmic reticulum, nucleus	17.4	15.64
KRH18585	Soybean	mitochondrion	13.77	13.53
KRH18578	Soybean	cytosol	7.84	10.96
KRG93398	Soybean	cytosol	2.68	8.14

Protein Annotations

MapMan:26.8.2.4.2	Gene3D:3.40.50.1820	UniProt:A0A0R0K4K3	InterPro:AB_hydrolase	EMBL:ACUP02003334	EMBL:ACUP02003335
InterPro:Fungal_lipase-like	EnsemblPlantsGene:GLYMA_05G194100	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	InterPro:IPR029058	EnsemblPlants:KRH59603	ProteinID:KRH59603	ProteinID:KRH59603.1
PFAM:PF01764	PANTHER:PTHR21493	PANTHER:PTHR21493:SF130	SUPFAM:SSF53474	UniParc:UPI0006EDB8A9	SEG:seg

Description

hypothetical protein

Coordinates

chr5:-:37879465..37886088

Molecular Weight (calculated)

58345.5 Da

IEP (calculated)

6.942

GRAVY (calculated)

-0.149

Length

523 amino acids

Sequence
(BLAST)

001: MASNETSPFE SREMLATFVS STPLLSESWR LCSQANATPF RTFVTERVGA AVYVAFSGVH MAGESDPNWR SLIPLDSIGG VPLFSSRRSK EGEEPVMVHA
101: GMLNLFFSLF NSFQNQMLEI VGSKDTKSVV ITGHSIGGAT ASLCTLWLLS YLQSISSSVS VLCITYGAPL LGNESFSQII FKERWGGNFC HVVSKHDIMP
201: RLLFAPITSL STQLNSLLQF WHLSMTSPDM GKLANQISEK EKDKLFTAVV DYLETATQDG ETSVPILFHP FGSYFFVSEE GAVCVDSSAA IIKMMHLTLA
301: TSSPASSIED HLKYGDYVNK MSAQTLYQSN SMQKSIPDSS YEAGLELAIQ SSGIANQESA ITSAKECLKT TRRMGPSPTL NAASLALSLS KVVPYRAQIE
401: WYKTWCEKQD DQMGYYDSFK SRNSSSSKRG MKVNINRCKL ARFWNNVIDM LERGELPHDF DKRAKWVYTS HFYKLLEVSS DVLFKNSSYS IWVEDLRELK
501: QLKAKVQRFP HQFTGFLDGE VVP

Best Arabidopsis Sequence Match ( AT3G52430.1 )
(BLAST)

001: MDDCRFETSE LQASVMISTP LFTDSWSSCN TANCNGSIKI HDIAGITYVA IPAVSMIQLG NLVGLPVTGD VLFPGLSSDE PLPMVDAAIL KLFLQLKIKE
101: GLELELLGKK LVVITGHSTG GALAAFTALW LLSQSSPPSF RVFCITFGSP LLGNQSLSTS ISRSRLAHNF CHVVSIHDLV PRSSNEQFWP FGTYLFCSDK
201: GGVCLDNAGS VRLMFNILNT TATQNTEEHQ RYGHYVFTLS HMFLKSRSFL GGSIPDNSYQ AGVALAVEAL GFSNDDTSGV LVKECIETAT RIVRAPILRS
301: AELANELASV LPARLEIQWY KDRCDASEEQ LGYYDFFKRY SLKRDFKVNM SRIRLAKFWD TVIKMVETNE LPFDFHLGKK WIYASQFYQL LAEPLDIANF
401: YKNRDIKTGG HYLEGNRPKR YEVIDKWQKG VKVPEECVRS RYASTTQDTC FWAKLEQAKE WLDEARKESS DPQRRSLLRE KIVPFESYAN TLVTKKEVSL
501: DVKAKNSSYS VWEANLKEFK CKMGYENEIE MVVDESDAME T

Arabidopsis Description

PAD4Lipase-like PAD4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S745]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.