Factsheet for Zm00001d004706_P002

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005708_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52430.1	Zm00001d005708_P001	AT3G48090.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053138_P002	Maize	cytosol, peroxisome, plastid	87.4	86.34
EES08158	Sorghum	cytosol, peroxisome, plastid	84.02	81.64
Os11t0195500-01	Rice	mitochondrion	57.91	70.47
TraesCS4A01G216100.1	Wheat	peroxisome	68.36	68.36
TraesCS4D01G096400.2	Wheat	peroxisome	68.2	68.1
TraesCS4B01G100100.1	Wheat	peroxisome	67.43	67.33
HORVU4Hr1G043530.1	Barley	mitochondrion	68.97	63.78
GSMUA_Achr6P12900_001	Banana	cytosol	46.24	49.92
GSMUA_Achr2P20660_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	42.86	45.74
PGSC0003DMT400051170	Potato	cytosol	36.1	40.66
VIT_07s0031g02390.t01	Wine grape	cytosol	38.4	40.39
Solyc02g032850.2.1	Tomato	cytosol	35.02	39.45
CDY67344	Canola	plastid	25.81	39.07
KRH53943	Soybean	cytosol, nucleus, peroxisome	37.79	38.86
CDY23217	Canola	plastid	25.65	38.84
Bra033431.1-P	Field mustard	plastid	25.65	38.84
KRH63997	Soybean	cytosol, nucleus, peroxisome	37.02	38.07
KRH40959	Soybean	cytosol	36.87	37.91
CDY69054	Canola	cytosol	25.65	37.78
CDY68190	Canola	cytosol	18.28	37.54
KRH59603	Soybean	plastid	28.88	35.95
CDY29081	Canola	cytosol, endoplasmic reticulum, peroxisome	30.26	35.88
CDX78091	Canola	cytosol, nucleus, peroxisome	30.11	35.83
Bra006922.1-P	Field mustard	cytosol, nucleus, peroxisome	30.11	35.83
CDX73637	Canola	cytosol, nucleus, peroxisome	30.11	35.77
AT3G52430.1	Thale cress	cytosol, nucleus, peroxisome	29.03	34.94
CDX90603	Canola	plasma membrane	29.8	30.79
Bra012805.1-P	Field mustard	plasma membrane	29.8	30.79
Zm00001d005708_P001	Maize	cytosol, nucleus, peroxisome, plastid	19.66	20.68

Protein Annotations

EntrezGene:100272668	MapMan:26.8.2.4.1	MapMan:26.8.2.4.2	Gene3D:3.40.50.1820	UniProt:A0A1D6EH29	InterPro:AB_hydrolase
ncoils:Coil	InterPro:Fungal_lipase-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	InterPro:IPR029058	ProteinID:ONM19448.1	PFAM:PF01764	PANTHER:PTHR21493
PANTHER:PTHR21493:SF130	SUPFAM:SSF53474	UniParc:UPI00084521B7	EnsemblPlantsGene:Zm00001d004706	EnsemblPlants:Zm00001d004706_P002	EnsemblPlants:Zm00001d004706_T002
SEG:seg	:	:	:	:	:

Description

Lipase-like PAD4

Coordinates

chr2:-:132363395..132367683

Molecular Weight (calculated)

70976.4 Da

IEP (calculated)

7.101

GRAVY (calculated)

-0.148

Length

651 amino acids

Sequence
(BLAST)

001: MDDAAAEEEA SMFETSHVLG ALLASSPLLA RAWDRCTAAS AAAPWFVHGE DGGKVYVGFS GVQAALTAAG AAVAGGGADI FAPVSLGGDA AGRMFAPLVA
101: AEPDPAATGE PVAVQALALQ CFLKLCCSPD FQMLLNQIRG KAVVFTGHSL GGAVAALTAL HYLCISSSSS PPAPPVLCVT FGSPLLGNEA LSRAILREHW
201: GGNFCHVVSQ HDVVPRLLFC SPDAVPAHII VGMQLQQWPA WTRHTGAVST VTAHMADTDK DVLRQLIQTH VGAVAVEQKL AASETTGGSP YRPFGTYVLC
301: SPEGAACVDN PTAAVQMLYA TFASQSSAGA ESPEAAHSCY GELVLKMPHH LLLKRWLRVD DDMPATPNYD DGVSLALEAS GIDVMVRVCA MEASTARHWL
401: KTSKRAGRRP SLNCARLATQ LGRVTPCRAQ IEWYKALFDA EMGYYDAFKQ RRSPRKYTKV NLNRIKLGQF WDRVLSMLDA GQLPHDFHRR AKWVNASRFY
501: QLLVEPLDIA DYHRHGHHLT SGSYMTHGRE RRYELFDRWW HEKGCTGAGG GITSSMSAAS ASSRRRSKYA GLTQDPCFWA RVEEAREQTE SARRERDVAE
601: LAMKLEELQE FERYSRELVA TKEVSVDVLA PQSSYTLWVE DWNQLKLRAQ G

Best Arabidopsis Sequence Match ( AT3G52430.1 )
(BLAST)

001: MDDCRFETSE LQASVMISTP LFTDSWSSCN TANCNGSIKI HDIAGITYVA IPAVSMIQLG NLVGLPVTGD VLFPGLSSDE PLPMVDAAIL KLFLQLKIKE
101: GLELELLGKK LVVITGHSTG GALAAFTALW LLSQSSPPSF RVFCITFGSP LLGNQSLSTS ISRSRLAHNF CHVVSIHDLV PRSSNEQFWP FGTYLFCSDK
201: GGVCLDNAGS VRLMFNILNT TATQNTEEHQ RYGHYVFTLS HMFLKSRSFL GGSIPDNSYQ AGVALAVEAL GFSNDDTSGV LVKECIETAT RIVRAPILRS
301: AELANELASV LPARLEIQWY KDRCDASEEQ LGYYDFFKRY SLKRDFKVNM SRIRLAKFWD TVIKMVETNE LPFDFHLGKK WIYASQFYQL LAEPLDIANF
401: YKNRDIKTGG HYLEGNRPKR YEVIDKWQKG VKVPEECVRS RYASTTQDTC FWAKLEQAKE WLDEARKESS DPQRRSLLRE KIVPFESYAN TLVTKKEVSL
501: DVKAKNSSYS VWEANLKEFK CKMGYENEIE MVVDESDAME T

Arabidopsis Description

PAD4Lipase-like PAD4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S745]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.