CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG35573

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52430.1	KXG35573	AT3G48090.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053138_P002	Maize	cytosol, peroxisome, plastid	83.13	84.52
Zm00001d004706_P002	Maize	cytosol, peroxisome, plastid	81.64	84.02
Os11t0195500-01	Rice	mitochondrion	56.72	71.03
TraesCS4A01G216100.1	Wheat	peroxisome	67.76	69.74
TraesCS4D01G096400.2	Wheat	peroxisome	65.67	67.48
TraesCS4B01G100100.1	Wheat	peroxisome	65.22	67.02
HORVU4Hr1G043530.1	Barley	mitochondrion	67.61	64.35
GSMUA_Achr6P12900_001	Banana	cytosol	45.82	50.91
GSMUA_Achr2P20660_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	43.58	47.87
VIT_07s0031g02390.t01	Wine grape	cytosol	38.21	41.36
PGSC0003DMT400051170	Potato	cytosol	35.22	40.83
KRH53943	Soybean	cytosol, nucleus, peroxisome	38.36	40.6
Solyc02g032850.2.1	Tomato	cytosol	34.33	39.79
KRH63997	Soybean	cytosol, nucleus, peroxisome	37.31	39.49
KRH40959	Soybean	cytosol	36.72	38.86
CDY67344	Canola	plastid	24.93	38.84
CDY23217	Canola	plastid	24.78	38.6
Bra033431.1-P	Field mustard	plastid	24.78	38.6
CDY69054	Canola	cytosol	24.93	37.78
CDY68190	Canola	cytosol	17.61	37.22
KRH59603	Soybean	plastid	28.66	36.71
AT3G52430.1	Thale cress	cytosol, nucleus, peroxisome	28.81	35.67
Bra006922.1-P	Field mustard	cytosol, nucleus, peroxisome	29.1	35.65
CDX73637	Canola	cytosol, nucleus, peroxisome	29.1	35.58
CDX78091	Canola	cytosol, nucleus, peroxisome	28.96	35.47
CDY29081	Canola	cytosol, endoplasmic reticulum, peroxisome	28.51	34.79
CDX90603	Canola	plasma membrane	28.51	30.32
Bra012805.1-P	Field mustard	plasma membrane	28.51	30.32
KXG35573	Sorghum	cytosol, nucleus, peroxisome	19.55	21.41

Protein Annotations

MapMan:26.8.2.4.1	MapMan:26.8.2.4.2	Gene3D:3.40.50.1820	EntrezGene:8074330	InterPro:AB_hydrolase	UniProt:C5Y6S1
ncoils:Coil	EnsemblPlants:EES08158	ProteinID:EES08158	ProteinID:EES08158.1	InterPro:Fungal_lipase-like	GO:GO:0001666
GO:GO:0002213	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006629	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009058	GO:GO:0009605
GO:GO:0009607	GO:GO:0009625	GO:GO:0009628	GO:GO:0009653	GO:GO:0009719	GO:GO:0009816
GO:GO:0009862	GO:GO:0009987	GO:GO:0010105	GO:GO:0010150	GO:GO:0010225	GO:GO:0010310
GO:GO:0010618	GO:GO:0010942	GO:GO:0016787	GO:GO:0019748	GO:GO:0031348	GO:GO:0071327
GO:GO:0080142	GO:GO:0080151	GO:GO:1900367	GO:GO:1900426	GO:GO:1901183	GO:GO:2000022
InterPro:IPR029058	PFAM:PF01764	PANTHER:PTHR21493	PANTHER:PTHR21493:SF130	EnsemblPlantsGene:SORBI_3005G072200	SUPFAM:SSF53474
UniParc:UPI0001A8619A	RefSeq:XP_002449170.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:8664614..8668855

Molecular Weight (calculated)

72487.2 Da

IEP (calculated)

6.992

GRAVY (calculated)

-0.166

Length

670 amino acids

Sequence
(BLAST)

001: MDDASGDEEA SMFETSHVLG ALLASSPLLA RAWDRCTAAT AAAPGFVVHG EDEDGGGKVY VGFSGVQAAL SAAGAAVAGG GRGADVFAPV GLGGGGDAAA
101: GRMFAPLVAA EPDAPAAAAG EPVAVQALAL QCFLKLCGSP DFQMLLNEIR GKAVVFTGHS LGGAIAALAA LHYLCISSAS SPWAPAPPVL CVTFGSPLLG
201: NEALSRAILR ERWGGNFCHV VSQHDVVPRL LFCPPDAIPA DIIVGMQLHQ WPARTRQTGA VTTVTARMAH TDKDVLRQLI QKHVGAVAME QKLAAPDETT
301: GGSPYRPFGT YVLCSPEGAA CVDNATAAVQ MLYATFASRS SPGAESPEAA HSCYGELVLK MPQHLLLKRR LRVDDAPASP NYDDGVSLAL EASGIDAMAM
401: EASTARQWLK TSKRAGRRPS LNCARLATQL GRITPCRAQI EWYKALFDAE MGYYDAFKQR RSPRKYGKVN LNRIKLGQFW DRVLTMLDAG QLPHDFHRRA
501: KWVNAARFYQ LLVEPLDIAD YHHHGLHRTS GSYMTHGRER RYELFDRWWQ EKACTGGAGG DVTSSMSSAA ASASSRRRSK YAGLTQDPCF WARVEEAREQ
601: TESARSERDV AELAMKLEEL QEFESYSREL VASKEVSVDV LAPQSSYTLW VEEWNQLKLR DEVRAMLLRF

Best Arabidopsis Sequence Match ( AT3G52430.1 )
(BLAST)

001: MDDCRFETSE LQASVMISTP LFTDSWSSCN TANCNGSIKI HDIAGITYVA IPAVSMIQLG NLVGLPVTGD VLFPGLSSDE PLPMVDAAIL KLFLQLKIKE
101: GLELELLGKK LVVITGHSTG GALAAFTALW LLSQSSPPSF RVFCITFGSP LLGNQSLSTS ISRSRLAHNF CHVVSIHDLV PRSSNEQFWP FGTYLFCSDK
201: GGVCLDNAGS VRLMFNILNT TATQNTEEHQ RYGHYVFTLS HMFLKSRSFL GGSIPDNSYQ AGVALAVEAL GFSNDDTSGV LVKECIETAT RIVRAPILRS
301: AELANELASV LPARLEIQWY KDRCDASEEQ LGYYDFFKRY SLKRDFKVNM SRIRLAKFWD TVIKMVETNE LPFDFHLGKK WIYASQFYQL LAEPLDIANF
401: YKNRDIKTGG HYLEGNRPKR YEVIDKWQKG VKVPEECVRS RYASTTQDTC FWAKLEQAKE WLDEARKESS DPQRRSLLRE KIVPFESYAN TLVTKKEVSL
501: DVKAKNSSYS VWEANLKEFK CKMGYENEIE MVVDESDAME T

Arabidopsis Description

PAD4Lipase-like PAD4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S745]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.