Factsheet for GSMUA_Achr6P12900_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr8P25290_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52430.1	GSMUA_Achr8P25290_001	AT3G48090.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P20660_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	61.19	60.49
Zm00001d004706_P002	Maize	cytosol, peroxisome, plastid	49.92	46.24
Zm00001d053138_P002	Maize	cytosol, peroxisome, plastid	50.41	46.13
EES08158	Sorghum	cytosol, peroxisome, plastid	50.91	45.82
TraesCS4B01G100100.1	Wheat	peroxisome	48.26	44.63
TraesCS4A01G216100.1	Wheat	peroxisome	48.09	44.55
TraesCS4D01G096400.2	Wheat	peroxisome	47.6	44.02
Os11t0195500-01	Rice	mitochondrion	38.81	43.74
PGSC0003DMT400051170	Potato	cytosol	41.46	43.25
Solyc02g032850.2.1	Tomato	cytosol	40.8	42.56
HORVU4Hr1G043530.1	Barley	mitochondrion	48.59	41.62
VIT_07s0031g02390.t01	Wine grape	cytosol	41.96	40.87
KRH53943	Soybean	cytosol, nucleus, peroxisome	40.63	38.7
KRH63997	Soybean	cytosol, nucleus, peroxisome	40.46	38.55
Bra033431.1-P	Field mustard	plastid	26.87	37.67
CDY23217	Canola	plastid	26.87	37.67
KRH40959	Soybean	cytosol	39.47	37.6
CDY67344	Canola	plastid	26.53	37.21
CDY68190	Canola	cytosol	19.4	36.91
AT3G52430.1	Thale cress	cytosol, nucleus, peroxisome	32.5	36.23
CDY69054	Canola	cytosol	26.53	36.2
CDY29081	Canola	cytosol, endoplasmic reticulum, peroxisome	32.5	35.7
CDX73637	Canola	cytosol, nucleus, peroxisome	32.17	35.4
KRH59603	Soybean	plastid	30.68	35.37
Bra006922.1-P	Field mustard	cytosol, nucleus, peroxisome	32.01	35.28
CDX78091	Canola	cytosol, nucleus, peroxisome	32.01	35.28
CDX90603	Canola	plasma membrane	32.67	31.27
Bra012805.1-P	Field mustard	plasma membrane	32.67	31.27
GSMUA_Achr8P25290_001	Banana	plastid	24.21	22.71

Protein Annotations

EnsemblPlants:GSMUA_Achr6P12900_001	EnsemblPlants:GSMUA_Achr6T12900_001	EnsemblPlantsGene:GSMUA_Achr6G12900_001	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:AB_hydrolase	InterPro:Fungal_lipase-like
InterPro:IPR029058	PANTHER:PTHR21493	PANTHER:PTHR21493:SF130	PFAM:PF01764	SEG:seg	SUPFAM:SSF53474
UniParc:UPI0002960E1C	UniProt:M0T6I8	MapMan:26.8.2.4.2	:	:	:

Description

lipase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G12900_001]

Coordinates

chr6:-:8616758..8619847

Molecular Weight (calculated)

67501.5 Da

IEP (calculated)

8.143

GRAVY (calculated)

-0.282

Length

603 amino acids

Sequence
(BLAST)

001: MDGLKVEEEH CMFETSHVLG ALLASSPLLT QAWGRCVHAN AGSSSFVLQR CDDAVYVAFS STPSSTPTAL GGGFFDLVPI SSGGHELFAP LEGAAHPVLV
101: QAGALRLFLS SYRSPDFQML ITETRNKSVI FTGHSVGGSI ASLAALYFLC SSSRPDAPSP ASLVCITFGS PLLGDETLSR AILRERWGGR FCHVVSQHDI
201: MPRLLFCPFP RPALQLTDDQ KAELQGYISM HIGAAASEQT QHISPYRPYG NYALCSAEGA VCIDDPLVAA KMLHLTFTTG SASISFEEQH ISYGNLVVEL
301: SQNLQFRRRL HLEDDAPKSN RSAGVSLALE TSGIGIQDMG AMEAREWLEM SMCRRPKLQC ASLAIKLAKV TPCRAQIEWY KALCDDDTGY YDSFKLRRAS
401: KKDARVNMNR IRLGQFWDEL LDMIQNNNLP PDFHKRSKWV NAAQFYKLLV EPLDIAEYYR CQWPRTRRHY LTHGRERRYE VFDRWWNDRN KEAPEKAAAH
501: RKRSKFAGLT QDSCFWAKVE EARDSVKNAW AEKNPTKLVK LWENLHGFES YANGLIRRKE VSVDVLAPRS SYSLWVEELK DLKSKQACRL PSSSVLVGVT
601: GGT

Best Arabidopsis Sequence Match ( AT3G52430.1 )
(BLAST)

001: MDDCRFETSE LQASVMISTP LFTDSWSSCN TANCNGSIKI HDIAGITYVA IPAVSMIQLG NLVGLPVTGD VLFPGLSSDE PLPMVDAAIL KLFLQLKIKE
101: GLELELLGKK LVVITGHSTG GALAAFTALW LLSQSSPPSF RVFCITFGSP LLGNQSLSTS ISRSRLAHNF CHVVSIHDLV PRSSNEQFWP FGTYLFCSDK
201: GGVCLDNAGS VRLMFNILNT TATQNTEEHQ RYGHYVFTLS HMFLKSRSFL GGSIPDNSYQ AGVALAVEAL GFSNDDTSGV LVKECIETAT RIVRAPILRS
301: AELANELASV LPARLEIQWY KDRCDASEEQ LGYYDFFKRY SLKRDFKVNM SRIRLAKFWD TVIKMVETNE LPFDFHLGKK WIYASQFYQL LAEPLDIANF
401: YKNRDIKTGG HYLEGNRPKR YEVIDKWQKG VKVPEECVRS RYASTTQDTC FWAKLEQAKE WLDEARKESS DPQRRSLLRE KIVPFESYAN TLVTKKEVSL
501: DVKAKNSSYS VWEANLKEFK CKMGYENEIE MVVDESDAME T

Arabidopsis Description

PAD4Lipase-like PAD4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S745]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.