CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68479
CDX68481
CDX83034
CDX83035
CDY44979
CDY68128

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52430.1	CDX68479	AT3G48090.1	11574472
AT3G52430.1	CDX68481	AT3G48090.1	11574472
AT3G52430.1	CDX83034	AT3G48090.1	11574472
AT3G52430.1	CDX83035	AT3G48090.1	11574472
AT3G52430.1	CDY44979	AT3G48090.1	11574472
AT3G52430.1	CDY68128	AT3G48090.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68190	Canola	cytosol	64.03	89.27
CDY23217	Canola	plastid	67.65	69.53
CDY67344	Canola	plastid	67.19	69.07
CDX73637	Canola	cytosol, nucleus, peroxisome	84.84	68.43
CDX78091	Canola	cytosol, nucleus, peroxisome	82.81	66.91
CDY29081	Canola	cytosol, endoplasmic reticulum, peroxisome	67.65	54.46
AT3G52430.1	Thale cress	cytosol, nucleus, peroxisome	64.71	52.87
CDX90603	Canola	plasma membrane	66.52	46.67
VIT_07s0031g02390.t01	Wine grape	cytosol	44.12	31.5
PGSC0003DMT400051170	Potato	cytosol	40.05	30.62
Solyc02g032850.2.1	Tomato	cytosol	38.91	29.76
KRH53943	Soybean	cytosol, nucleus, peroxisome	42.53	29.7
KRH63997	Soybean	cytosol, nucleus, peroxisome	42.31	29.54
KRH40959	Soybean	cytosol	41.4	28.91
GSMUA_Achr2P20660_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	37.1	26.89
GSMUA_Achr6P12900_001	Banana	cytosol	36.2	26.53
KRH59603	Soybean	plastid	30.77	26.0
Zm00001d004706_P002	Maize	cytosol, peroxisome, plastid	37.78	25.65
Zm00001d053138_P002	Maize	cytosol, peroxisome, plastid	37.56	25.19
EES08158	Sorghum	cytosol, peroxisome, plastid	37.78	24.93
TraesCS4D01G096400.2	Wheat	peroxisome	36.2	24.54
TraesCS4B01G100100.1	Wheat	peroxisome	36.2	24.54
TraesCS4A01G216100.1	Wheat	peroxisome	35.52	24.12
CDY09901	Canola	cytosol, endoplasmic reticulum, nucleus	20.14	23.18
CDY00844	Canola	extracellular	3.39	23.08
HORVU4Hr1G043530.1	Barley	mitochondrion	35.97	22.59
Os11t0195500-01	Rice	mitochondrion	26.7	22.06
CDX70581	Canola	cytosol	25.34	21.29
CDX78600	Canola	extracellular	24.89	20.6
CDX70584	Canola	cytosol	24.21	20.34
CDX70582	Canola	cytosol	23.3	19.85
CDY09899	Canola	extracellular, vacuole	23.76	19.37
CDY69990	Canola	endoplasmic reticulum	23.98	18.69
CDY29080	Canola	extracellular	2.94	18.57
CDX78601	Canola	nucleus	20.59	18.13
CDX68479	Canola	cytosol, extracellular, plastid	21.04	17.68
CDY44979	Canola	cytosol	23.53	17.33
CDX83034	Canola	cytosol, extracellular, plastid	20.59	17.3
CDY68128	Canola	cytosol	22.85	16.83
CDX83035	Canola	cytosol	21.49	16.38
CDX68481	Canola	cytosol	16.74	14.65

Protein Annotations

Gene3D:3.40.50.1820	MapMan:35.1	GO:A0A078JQG8	UniProt:A0A078JQG8	InterPro:AB_hydrolase	EnsemblPlants:CDY69054
ProteinID:CDY69054	ProteinID:CDY69054.1	ncoils:Coil	InterPro:Fungal_lipase-like	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00082607001	InterPro:IPR029058
PFAM:PF01764	PANTHER:PTHR21493	PANTHER:PTHR21493:SF130	SUPFAM:SSF53474	UniParc:UPI0004EE7BF0	SEG:seg

Description

BnaCnng61630DBnaCnng61630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQG8]

Coordinates

chrLK038537:-:348..2645

Molecular Weight (calculated)

51057.6 Da

IEP (calculated)

8.607

GRAVY (calculated)

-0.483

Length

442 amino acids

Sequence
(BLAST)

001: MRQFEKENQW SITKGLELEE TKQVVITGHS TGGALAALTA LWLLSQPSPP PFRLLCITFG SPLLGNQSFS FSVSRSRLAY KFCHVVSIHD LVPRGNADRF
101: WPFGTYLFCS DSGGLCLENA DSVCGMFRIL NSTGTPNIEE HQGYGYYVST LSYQFLISRS FRGGRISDNS YEAGAALAVE SLGFSNDQEI GVLVKECIET
201: ATKKNRAPIL RTSELPKHIE WYKHNCDVST KQFGYYDNFR QFSNTREIRV NMSRAKLAKF WDGVFEMVEK NELPFDFYLA KKWVYTSKLY QLLFEPLDIA
301: YFYKYKYSRT SGHYMKSGNR PKRYEVIDKW WKARGEPHKE KRARTRYAST TQDTCFWAKL EEAKECLDDL TCESSDAQKQ TLLWKKIYEF ERYSATLVKM
401: KEVSKDVLAT NSSYTVWVEK LREFNKLKMS NGVVDESDAM ET

Best Arabidopsis Sequence Match ( AT3G52430.1 )
(BLAST)

001: MDDCRFETSE LQASVMISTP LFTDSWSSCN TANCNGSIKI HDIAGITYVA IPAVSMIQLG NLVGLPVTGD VLFPGLSSDE PLPMVDAAIL KLFLQLKIKE
101: GLELELLGKK LVVITGHSTG GALAAFTALW LLSQSSPPSF RVFCITFGSP LLGNQSLSTS ISRSRLAHNF CHVVSIHDLV PRSSNEQFWP FGTYLFCSDK
201: GGVCLDNAGS VRLMFNILNT TATQNTEEHQ RYGHYVFTLS HMFLKSRSFL GGSIPDNSYQ AGVALAVEAL GFSNDDTSGV LVKECIETAT RIVRAPILRS
301: AELANELASV LPARLEIQWY KDRCDASEEQ LGYYDFFKRY SLKRDFKVNM SRIRLAKFWD TVIKMVETNE LPFDFHLGKK WIYASQFYQL LAEPLDIANF
401: YKNRDIKTGG HYLEGNRPKR YEVIDKWQKG VKVPEECVRS RYASTTQDTC FWAKLEQAKE WLDEARKESS DPQRRSLLRE KIVPFESYAN TLVTKKEVSL
501: DVKAKNSSYS VWEANLKEFK CKMGYENEIE MVVDESDAME T

Arabidopsis Description

PAD4Lipase-like PAD4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S745]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.