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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68479
CDX68481
CDX73637
CDX78091
CDX83034
CDX83035
CDX90603
CDY23217
CDY29081
CDY44979
CDY67344
CDY68128
CDY68190
CDY69054

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G48090.1 CDX68479 AT3G48090.1 11574472
AT3G48090.1 CDX68481 AT3G48090.1 11574472
AT3G48090.1 CDX83034 AT3G48090.1 11574472
AT3G48090.1 CDX83035 AT3G48090.1 11574472
AT3G48090.1 CDY44979 AT3G48090.1 11574472
AT3G48090.1 CDY68128 AT3G48090.1 11574472
AT3G48090.1 CDX73637 AT3G52430.1 11574472
AT3G48090.1 CDX78091 AT3G52430.1 11574472
AT3G48090.1 CDX90603 AT3G52430.1 11574472
AT3G48090.1 CDY23217 AT3G52430.1 11574472
AT3G48090.1 CDY29081 AT3G52430.1 11574472
AT3G48090.1 CDY67344 AT3G52430.1 11574472
AT3G48090.1 CDY68190 AT3G52430.1 11574472
AT3G48090.1 CDY69054 AT3G52430.1 11574472
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY68128 Canola cytosol 92.5 92.5
CDX83034 Canola cytosol, extracellular, plastid 62.67 71.48
CDX68479 Canola cytosol, extracellular, plastid 62.17 70.91
CDX83035 Canola cytosol 58.67 60.69
AT3G48090.1 Thale cress cytosol 61.17 58.91
AT3G48080.1 Thale cress cytosol 61.17 58.35
CDX68481 Canola cytosol 48.33 57.43
PGSC0003DMT400083030 Potato cytosol 38.83 39.83
Solyc06g071280.2.1 Tomato cytosol 38.33 38.21
KRH63455 Soybean cytosol 38.17 37.42
VIT_17s0000g07560.t01 Wine grape cytosol 36.83 37.08
KRH54465 Soybean cytosol 36.5 35.61
KRH54468 Soybean cytosol 36.5 35.49
KRH54464 Soybean cytosol, endoplasmic reticulum 36.67 35.48
KXG35573 Sorghum cytosol, nucleus, peroxisome 35.17 34.48
Os09t0392100-01 Rice cytosol, nucleus, peroxisome, plastid 35.67 34.46
GSMUA_Achr8P25290_001 Banana plastid 36.5 34.06
VIT_17s0000g07370.t01 Wine grape cytosol 33.67 33.67
TraesCS5B01G200800.2 Wheat cytosol, nucleus, peroxisome, plastid 32.83 33.62
TraesCS5A01G202200.2 Wheat cytosol, nucleus, peroxisome, plastid 34.83 33.49
Zm00001d005708_P001 Maize cytosol, nucleus, peroxisome, plastid 34.5 33.44
TraesCS5D01G208600.1 Wheat plastid 34.67 33.39
VIT_17s0000g07420.t01 Wine grape cytosol 34.0 32.03
HORVU5Hr1G060060.2 Barley plastid 35.17 31.87
CDY67344 Canola plastid 17.83 24.88
CDY23217 Canola plastid 17.33 24.19
CDX70584 Canola cytosol 20.67 23.57
CDY69054 Canola cytosol 17.33 23.53
CDY68190 Canola cytosol 12.0 22.71
CDY09901 Canola cytosol, endoplasmic reticulum, nucleus 14.5 22.66
VIT_17s0000g07400.t01 Wine grape plastid 24.67 22.09
CDX78601 Canola nucleus 17.5 20.92
CDX70581 Canola cytosol 18.33 20.91
CDX70582 Canola cytosol 18.0 20.81
CDX73637 Canola cytosol, nucleus, peroxisome 18.83 20.62
CDY29081 Canola cytosol, endoplasmic reticulum, peroxisome 18.83 20.58
CDX78091 Canola cytosol, nucleus, peroxisome 18.67 20.48
CDX78600 Canola extracellular 18.17 20.41
CDY09899 Canola extracellular, vacuole 18.17 20.11
CDY69990 Canola endoplasmic reticulum 18.0 19.05
CDX90603 Canola plasma membrane 18.67 17.78
CDY29080 Canola extracellular 1.67 14.29
CDY00844 Canola extracellular 1.5 13.85
Protein Annotations
EnsemblPlants:CDY44979EnsemblPlantsGene:GSBRNA2T00081168001Gene3D:3.40.50.1820GO:A0A078I6D2GO:GO:0003674GO:GO:0003824
GO:GO:0006629GO:GO:0008150GO:GO:0008152GO:GO:0016787InterPro:AB_hydrolaseInterPro:Fungal_lipase-like
InterPro:IPR029058PANTHER:PTHR21493PANTHER:PTHR21493:SF94PFAM:PF01764ProteinID:CDY44979ProteinID:CDY44979.1
SEG:segSUPFAM:SSF53474UniParc:UPI0004EDB3C2UniProt:A0A078I6D2MapMan:26.8.2.4.1:
Description
BnaCnng12090DBnaCnng12090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I6D2]
Coordinates
chrLK032608:+:64690..67122
Molecular Weight (calculated)
68729.7 Da
IEP (calculated)
7.137
GRAVY (calculated)
-0.472
Length
600 amino acids
Sequence
(BLAST)
001: MALEALAGIT NDQITRSWKA STRAYNTDHF HKEEERETVV VAFAPSFLEK DWIAPENKSP FGETKMKRAQ FPCMRSIGND VDATVNESFL KNFQVLTSPT
101: TSFCDYVKTV VDSRQSQRIV FTGHSTGGAT AILATVWYLE TYFKKPRGGF PLPEPLCMTF GAPLVGDYVF KHALGRENWS RFFVNFVTRF DIVPRIMLAR
201: KASTKQALPR VLSQLDPRVA IQENDQSIPV FYTTVMKETA TVAHQAVCEL IGYGDAFLET FSSFLDLSPY RPAGIFVFST GTGLVSVSNS DAILQILFYA
301: SQSSNQHELS LVPFQSIKDH RSYEEMVHSM AMKPLNHLDL HHLPLDGDPM LRDLGLSTRA RQCVCAAFEA EKQRVDNQTK IYNKLPKIVE KLTWIEDEYK
401: PRCKTHKVGY YDSFKYSNEE KDFKANVSRA ELAGLFDEVL GLVKKGLLPD GFEGHKEWIE LSTRYRRLIE PLDISNYHRH LKNEDTGPYM LKGRPNRYKH
501: AQRGYEHELL KAGKSSEEIE ESGCGSCFWA DVEELKGKPY ESVEVKRFEK LVEGWITNRE IDDEQIFLDG STFTKWWRSL PEEHKRSSLL RQRMGETRST
Best Arabidopsis Sequence Match ( AT3G48080.1 )
(BLAST)
001: MAFEALTGVN GDLVTISWMA SKGANQTEHY LKEEVGGTVF FAFRASFSSE DLFATENTSP FGEIKMKRNQ FPCMRSIGND VDTTVNEAFL KSLEVLIGPR
101: TSFHASVQSA VDRKQQVVFT GHSFGGATAI LATVWYLETY FIRDAYAAPE PRCVTFGAPL VGDYIFKHAL GRENWSRFFV NFVTRFDIVP RIMLARKTTI
201: EQTLSYVLGK LDSTRAPIHE SDQVITEFYT RVMRDTYTVA SKAVCQLIGN GEAFLETLSS FYELSPYRPV GTFVFSTQKR LVVVNNSDAI LQMLFYTCQS
301: NDEQELSVIP FLSIRDHHGY EELVQSIGIK LLNHLDLHNP LLDGENSIGS ALDDLGMSTR ARQCIHAALE AEKQRVENQK KIETKRDQIV ERLTWIVEVY
401: KPKCQAHKNG YYDSFKDSNE ENDFKANVKR VELAGIFDEV LGLVKKGQLP DGFEGSRGWI NLATQYRRLI EPLDISNYHG QLKNEDTGPY MLHGRPSRYK
501: YAQRGYEHDI LKPTGMIAKD VFWSKVNGLN LGLQQDIQEI LKNSGSECGS CFWAEVEELK GKPYEEVQVR FKTLEGLLEG WIKDGEVDEK EIFLEGSTFR
601: KWWNTLPDSH KIHAPLYPRE RMMDETRAT
Arabidopsis Description
EDS1BProtein EDS1B [Source:UniProtKB/Swiss-Prot;Acc:Q9SU71]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.