CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

plastid 3
extracellular 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68479
CDX68481
CDX73637
CDX78091
CDX83034
CDX83035
CDX90603
CDY23217
CDY29081
CDY44979
CDY67344
CDY68128
CDY68190
CDY69054

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48090.1	CDX68479	AT3G48090.1	11574472
AT3G48090.1	CDX68481	AT3G48090.1	11574472
AT3G48090.1	CDX83034	AT3G48090.1	11574472
AT3G48090.1	CDX83035	AT3G48090.1	11574472
AT3G48090.1	CDY44979	AT3G48090.1	11574472
AT3G48090.1	CDY68128	AT3G48090.1	11574472
AT3G48090.1	CDX73637	AT3G52430.1	11574472
AT3G48090.1	CDX78091	AT3G52430.1	11574472
AT3G48090.1	CDX90603	AT3G52430.1	11574472
AT3G48090.1	CDY23217	AT3G52430.1	11574472
AT3G48090.1	CDY29081	AT3G52430.1	11574472
AT3G48090.1	CDY67344	AT3G52430.1	11574472
AT3G48090.1	CDY68190	AT3G52430.1	11574472
AT3G48090.1	CDY69054	AT3G52430.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83034	Canola	cytosol, extracellular, plastid	93.73	93.73
Bra033774.1-P	Field mustard	cytosol	92.97	82.6
CDY44979	Canola	cytosol	70.91	62.17
CDY68128	Canola	cytosol	70.72	62.0
CDX83035	Canola	cytosol	60.46	54.83
AT3G48080.1	Thale cress	cytosol	60.84	50.87
AT3G48090.1	Thale cress	cytosol	60.08	50.72
CDX68481	Canola	cytosol	48.1	50.1
PGSC0003DMT400083030	Potato	cytosol	39.54	35.56
VIT_17s0000g07560.t01	Wine grape	cytosol	39.35	34.73
KRH63455	Soybean	cytosol	40.11	34.48
Solyc06g071280.2.1	Tomato	cytosol	38.97	34.05
KRH54468	Soybean	cytosol	38.21	32.58
KRH54464	Soybean	cytosol, endoplasmic reticulum	37.64	31.94
GSMUA_Achr8P25290_001	Banana	plastid	38.21	31.26
Os09t0392100-01	Rice	cytosol, nucleus, peroxisome, plastid	36.88	31.24
TraesCS5B01G200800.2	Wheat	cytosol, nucleus, peroxisome, plastid	34.79	31.23
VIT_17s0000g07370.t01	Wine grape	cytosol	35.55	31.17
KXG35573	Sorghum	cytosol, nucleus, peroxisome	36.12	31.05
TraesCS5D01G208600.1	Wheat	plastid	36.69	30.98
TraesCS5A01G202200.2	Wheat	cytosol, nucleus, peroxisome, plastid	36.5	30.77
KRH54465	Soybean	cytosol	35.93	30.73
Zm00001d005708_P001	Maize	cytosol, nucleus, peroxisome, plastid	35.93	30.53
VIT_17s0000g07420.t01	Wine grape	cytosol	36.31	29.98
HORVU5Hr1G060060.2	Barley	plastid	36.88	29.31
CDY67344	Canola	plastid	18.06	22.09
CDY68190	Canola	cytosol	12.93	21.45
CDY23217	Canola	plastid	17.3	21.16
CDY69054	Canola	cytosol	17.68	21.04
CDX70584	Canola	cytosol	20.91	20.91
VIT_17s0000g07400.t01	Wine grape	plastid	24.71	19.4
CDY29081	Canola	cytosol, endoplasmic reticulum, peroxisome	20.15	19.31
CDX78601	Canola	nucleus	18.25	19.12
CDY09901	Canola	cytosol, endoplasmic reticulum, nucleus	13.88	19.01
CDX70582	Canola	cytosol	18.63	18.88
CDX73637	Canola	cytosol, nucleus, peroxisome	19.58	18.8
CDX78091	Canola	cytosol, nucleus, peroxisome	19.2	18.46
CDX70581	Canola	cytosol	18.44	18.44
CDX78600	Canola	extracellular	18.63	18.35
CDY09899	Canola	extracellular, vacuole	18.44	17.9
CDY69990	Canola	endoplasmic reticulum	18.44	17.11
CDX90603	Canola	plasma membrane	19.77	16.51
CDY29080	Canola	extracellular	2.09	15.71
CDY00844	Canola	extracellular	1.9	15.38

Protein Annotations

EnsemblPlants:CDX68479	EnsemblPlantsGene:GSBRNA2T00125964001	Gene3D:3.40.50.1820	GO:A0A078BXE7	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	InterPro:AB_hydrolase	InterPro:Fungal_lipase-like	InterPro:IPR029058	PANTHER:PTHR21493	PANTHER:PTHR21493:SF94
PFAM:PF01764	ProteinID:CDX68479	ProteinID:CDX68479.1	SUPFAM:SSF53474	UniParc:UPI0004EBE432	MapMan:26.8.2.4.1

Description

BnaC01g25570D

Coordinates

chrLK031788:+:2447355..2449697

Molecular Weight (calculated)

59775.0 Da

IEP (calculated)

7.404

GRAVY (calculated)

-0.423

Length

526 amino acids

Sequence
(BLAST)

001: MVLEALAGIS NALIATSWRA STTAYSTDHF HIEVEGDTVI FAFKQSFLVK DWFDPENASP FEETKMNREQ FPCMRSIGND VNATVNEAFL KNLKLLVSTS
101: FPHSVKTVVD SMRSQRIVFT GHSSGGATAI LATSGFFPEP LCLTFGAPLV GDYVFKHALG RENWSRFIVN FVTRFDIVPR IMLARKASTK QALPYALSQL
201: GRRAGNQGND QSTTGFFAMV MKDTATVAHQ AVCKLIGNGE PFLKTLSSFL ELSPYRPAGT FVFSTGTRLV SHLPLDGGES ALSDLGLSTR ARQCVRAAFE
301: AEKKRVDSQS KIDAKQPKIV EKLVWIEDEY KPKCLTHKIG YYDSFKESNE EKDFRANVNR AELAGIYDEV LGLVKEGQLP DGFEGRIEWI ELANRYRRLI
401: EPLDISNYHR HLKNEDTGPY MIHGRPNRYK HAQRGYEHEL LKACRSAEEI KRSDCGSCFW AEVEELRRKE YDEARVKKLE ELLEGWIRDK EVDDEHIFLE
501: DSSFRKWWQS LPEVHRRGSS LQVRMG

Best Arabidopsis Sequence Match ( AT3G48080.1 )
(BLAST)

001: MAFEALTGVN GDLVTISWMA SKGANQTEHY LKEEVGGTVF FAFRASFSSE DLFATENTSP FGEIKMKRNQ FPCMRSIGND VDTTVNEAFL KSLEVLIGPR
101: TSFHASVQSA VDRKQQVVFT GHSFGGATAI LATVWYLETY FIRDAYAAPE PRCVTFGAPL VGDYIFKHAL GRENWSRFFV NFVTRFDIVP RIMLARKTTI
201: EQTLSYVLGK LDSTRAPIHE SDQVITEFYT RVMRDTYTVA SKAVCQLIGN GEAFLETLSS FYELSPYRPV GTFVFSTQKR LVVVNNSDAI LQMLFYTCQS
301: NDEQELSVIP FLSIRDHHGY EELVQSIGIK LLNHLDLHNP LLDGENSIGS ALDDLGMSTR ARQCIHAALE AEKQRVENQK KIETKRDQIV ERLTWIVEVY
401: KPKCQAHKNG YYDSFKDSNE ENDFKANVKR VELAGIFDEV LGLVKKGQLP DGFEGSRGWI NLATQYRRLI EPLDISNYHG QLKNEDTGPY MLHGRPSRYK
501: YAQRGYEHDI LKPTGMIAKD VFWSKVNGLN LGLQQDIQEI LKNSGSECGS CFWAEVEELK GKPYEEVQVR FKTLEGLLEG WIKDGEVDEK EIFLEGSTFR
601: KWWNTLPDSH KIHAPLYPRE RMMDETRAT

Arabidopsis Description

EDS1BProtein EDS1B [Source:UniProtKB/Swiss-Prot;Acc:Q9SU71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.