CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
vacuole 1
mitochondrion 2
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68479
CDX68481
CDX83034
CDX83035
CDY44979
CDY68128

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52430.1	CDX68479	AT3G48090.1	11574472
AT3G52430.1	CDX68481	AT3G48090.1	11574472
AT3G52430.1	CDX83034	AT3G48090.1	11574472
AT3G52430.1	CDX83035	AT3G48090.1	11574472
AT3G52430.1	CDY44979	AT3G48090.1	11574472
AT3G52430.1	CDY68128	AT3G48090.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033431.1-P	Field mustard	plastid	100.0	100.0
CDY67344	Canola	plastid	94.42	94.42
CDY69054	Canola	cytosol	69.53	67.65
CDY68190	Canola	cytosol	47.67	64.67
CDX78091	Canola	cytosol, nucleus, peroxisome	76.51	60.15
CDX73637	Canola	cytosol, nucleus, peroxisome	76.28	59.85
CDY29081	Canola	cytosol, endoplasmic reticulum, peroxisome	74.19	58.11
AT3G52430.1	Thale cress	cytosol, nucleus, peroxisome	68.84	54.71
CDX90603	Canola	plasma membrane	74.42	50.79
VIT_07s0031g02390.t01	Wine grape	cytosol	45.81	31.83
Solyc02g032850.2.1	Tomato	cytosol	40.93	30.45
PGSC0003DMT400051170	Potato	cytosol	40.93	30.45
KRH53943	Soybean	cytosol, nucleus, peroxisome	44.42	30.17
KRH63997	Soybean	cytosol, nucleus, peroxisome	43.02	29.23
KRH40959	Soybean	cytosol	43.02	29.23
GSMUA_Achr2P20660_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	40.23	28.36
GSMUA_Achr6P12900_001	Banana	cytosol	37.67	26.87
KRH59603	Soybean	plastid	32.09	26.39
Zm00001d004706_P002	Maize	cytosol, peroxisome, plastid	38.84	25.65
TraesCS4B01G100100.1	Wheat	peroxisome	38.14	25.15
TraesCS4A01G216100.1	Wheat	peroxisome	37.91	25.04
TraesCS4D01G096400.2	Wheat	peroxisome	37.91	25.0
Zm00001d053138_P002	Maize	cytosol, peroxisome, plastid	38.14	24.89
EES08158	Sorghum	cytosol, peroxisome, plastid	38.6	24.78
HORVU4Hr1G043530.1	Barley	mitochondrion	38.6	23.58
CDY00844	Canola	extracellular	3.49	23.08
Os11t0195500-01	Rice	mitochondrion	28.37	22.8
CDY09901	Canola	cytosol, endoplasmic reticulum, nucleus	19.53	21.88
CDX70584	Canola	cytosol	24.88	20.34
CDX78600	Canola	extracellular	25.12	20.22
CDX70581	Canola	cytosol	24.65	20.15
CDX70582	Canola	cytosol	23.72	19.65
CDY09899	Canola	extracellular, vacuole	24.42	19.37
CDY69990	Canola	endoplasmic reticulum	24.65	18.69
CDY29080	Canola	extracellular	3.02	18.57
CDX78601	Canola	nucleus	20.7	17.73
CDX83034	Canola	cytosol, extracellular, plastid	21.63	17.68
CDY44979	Canola	cytosol	24.19	17.33
CDX68479	Canola	cytosol, extracellular, plastid	21.16	17.3
CDY68128	Canola	cytosol	23.72	17.0
CDX83035	Canola	cytosol	21.16	15.69
CDX68481	Canola	cytosol	16.74	14.26

Protein Annotations

MapMan:26.8.2.4.2	Gene3D:3.40.50.1820	GO:A0A078GDT3	UniProt:A0A078GDT3	InterPro:AB_hydrolase	EnsemblPlants:CDY23217
ProteinID:CDY23217	ProteinID:CDY23217.1	ncoils:Coil	InterPro:Fungal_lipase-like	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00021761001	InterPro:IPR029058	PFAM:PF01764	PANTHER:PTHR21493	PANTHER:PTHR21493:SF130
SUPFAM:SSF53474	TMHMM:TMhelix	UniParc:UPI0002545464	SEG:seg	:	:

Description

BnaA04g05420DBnaA04g05420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDT3]

Coordinates

chrLK032141:+:417008..418418

Molecular Weight (calculated)

49121.3 Da

IEP (calculated)

8.360

GRAVY (calculated)

-0.442

Length

430 amino acids

Sequence
(BLAST)

001: MEERKQVVIT GHSTGGSVAA LTALWLLSQP SKPSFRLLCI TFGSPLLGNQ SLSSSISRSR LAHNFCNVVS IHDLAPRRND DLWPFGTFLF CSDNGGVCLD
101: NADSVRRMFF ILNSTGTPNI EERPRYEHYV STLSHQFLVS RSFSGGSLSD NSYQAGVALA VESLGFSRDN PSGVSAKECI EAATEITRAP IVRSSELAIE
201: LGNVLPSRLE IQWFKDSCDG SPKQLGYYDN FKVMSKREMK VNMSRAKLAK FWDGVIRMVE KKELPFDFHL GKKWVYASQF YQLLAEPLDI AYFYKYDYSR
301: TKGHYMENGN RHKRYVEIDK WWKEKGEPHK EKGARTRNAS TTQDTCFWAK LEEAKECLDD MKSESIDEQR RYLLWKRIVG FESYANTLVK MKEVSVDVLA
401: RNSSYSVWVE RLSEFKIKNG NMVADDAMEF

Best Arabidopsis Sequence Match ( AT3G52430.1 )
(BLAST)

001: MDDCRFETSE LQASVMISTP LFTDSWSSCN TANCNGSIKI HDIAGITYVA IPAVSMIQLG NLVGLPVTGD VLFPGLSSDE PLPMVDAAIL KLFLQLKIKE
101: GLELELLGKK LVVITGHSTG GALAAFTALW LLSQSSPPSF RVFCITFGSP LLGNQSLSTS ISRSRLAHNF CHVVSIHDLV PRSSNEQFWP FGTYLFCSDK
201: GGVCLDNAGS VRLMFNILNT TATQNTEEHQ RYGHYVFTLS HMFLKSRSFL GGSIPDNSYQ AGVALAVEAL GFSNDDTSGV LVKECIETAT RIVRAPILRS
301: AELANELASV LPARLEIQWY KDRCDASEEQ LGYYDFFKRY SLKRDFKVNM SRIRLAKFWD TVIKMVETNE LPFDFHLGKK WIYASQFYQL LAEPLDIANF
401: YKNRDIKTGG HYLEGNRPKR YEVIDKWQKG VKVPEECVRS RYASTTQDTC FWAKLEQAKE WLDEARKESS DPQRRSLLRE KIVPFESYAN TLVTKKEVSL
501: DVKAKNSSYS VWEANLKEFK CKMGYENEIE MVVDESDAME T

Arabidopsis Description

PAD4Lipase-like PAD4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S745]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.