CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH54464
KRH54465
KRH54468
KRH63455

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52430.1	KRH54464	AT3G48090.1	11574472
AT3G52430.1	KRH54465	AT3G48090.1	11574472
AT3G52430.1	KRH54468	AT3G48090.1	11574472
AT3G52430.1	KRH63455	AT3G48090.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59603	Soybean	plastid	70.62	85.47
KRH53943	Soybean	cytosol, nucleus, peroxisome	65.4	65.4
KRH63997	Soybean	cytosol, nucleus, peroxisome	64.61	64.61
VIT_07s0031g02390.t01	Wine grape	cytosol	51.18	52.34
PGSC0003DMT400051170	Potato	cytosol	45.34	49.65
Solyc02g032850.2.1	Tomato	cytosol	44.23	48.44
CDY67344	Canola	plastid	29.38	43.26
CDY23217	Canola	plastid	29.23	43.02
Bra033431.1-P	Field mustard	plastid	29.23	43.02
CDY68190	Canola	cytosol	21.17	42.27
CDY69054	Canola	cytosol	28.91	41.4
CDX73637	Canola	cytosol, nucleus, peroxisome	35.23	40.69
CDY29081	Canola	cytosol, endoplasmic reticulum, peroxisome	34.91	40.26
Bra006922.1-P	Field mustard	cytosol, nucleus, peroxisome	34.6	40.04
GSMUA_Achr2P20660_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	38.23	39.67
CDX78091	Canola	cytosol, nucleus, peroxisome	34.28	39.67
AT3G52430.1	Thale cress	cytosol, nucleus, peroxisome	33.81	39.56
GSMUA_Achr6P12900_001	Banana	cytosol	37.6	39.47
Zm00001d053138_P002	Maize	cytosol, peroxisome, plastid	38.55	37.03
Zm00001d004706_P002	Maize	cytosol, peroxisome, plastid	37.91	36.87
EES08158	Sorghum	cytosol, peroxisome, plastid	38.86	36.72
TraesCS4D01G096400.2	Wheat	peroxisome	37.44	36.35
TraesCS4B01G100100.1	Wheat	peroxisome	37.28	36.2
TraesCS4A01G216100.1	Wheat	peroxisome	36.97	35.94
Os11t0195500-01	Rice	mitochondrion	29.7	35.14
CDX90603	Canola	plasma membrane	34.76	34.92
Bra012805.1-P	Field mustard	plasma membrane	34.6	34.76
HORVU4Hr1G043530.1	Barley	mitochondrion	37.28	33.52
KRG93398	Soybean	cytosol	7.27	26.74
KRH63455	Soybean	cytosol	24.01	24.84
KRH54468	Soybean	cytosol	23.06	23.66
KRG93399	Soybean	plastid	21.17	22.83
KRH18587	Soybean	endoplasmic reticulum, nucleus	20.06	21.82
KRH54464	Soybean	cytosol, endoplasmic reticulum	21.33	21.77
KRH54465	Soybean	cytosol	21.01	21.63
KRH18578	Soybean	cytosol	12.16	20.59
KRH18585	Soybean	mitochondrion	17.06	20.3

Protein Annotations

MapMan:26.8.2.4.1	MapMan:26.8.2.4.2	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	EMBL:ACUP02004742	InterPro:Fungal_lipase-like
EnsemblPlantsGene:GLYMA_08G002100	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	InterPro:IPR029058	UniProt:K7L476	EnsemblPlants:KRH40959	ProteinID:KRH40959	ProteinID:KRH40959.1
PFAM:PF01764	PANTHER:PTHR21493	PANTHER:PTHR21493:SF130	SUPFAM:SSF53474	UniParc:UPI0002338876	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:141169..148314

Molecular Weight (calculated)

72065.6 Da

IEP (calculated)

6.874

GRAVY (calculated)

-0.349

Length

633 amino acids

Sequence
(BLAST)

001: MRMASNETSP FESREMLASF VSSTPLLSDS WRLCTQANAT PFLTFVTERV GASVYVAFSG VHMAGESDPN WRNLTPLYSI GGLPLFSSRR SKEWEEPVMV
101: HAGILNLFFS LFNSFQNQML EIVGNKDTKS VVITGHSIGG ATASLCTLWL LSYLQSISSS VSILCITYGA PLIGNESFSQ TIFKERWGGN FCHVVSKHDI
201: MPRLLFAPIT SLSTQLNSLL QFWHLSMTSP DFGKLANQIS EKEKDKLFTA VMDYLEAATQ DGEKSAPILF HPFGSYFFVS EEGAVCVDSP SAIIKMMHLM
301: LATSSPASSI EDHLKYGDYV NKMSAQTLYQ SNSMQKNIPD SSYEAGLELA IQSSGIANQE PAITSAKECL KTTRRMGPSP TLNAASLAVS LSKVVPYRAQ
401: IEWYKTWCDE QDDQMGYYDS FKSRDSSSSK RDMKININRC KLARFWNNVI DMLERGELPH DFDKRAKWVN TSHFYKLLVE PLDIAEYYGK GMHRTKGHYM
501: QHGRERRYEI FDRWWKDKTV TTGREENKER SKFASLTQDS CFWARVEEAR DWLNCVRSER DTNKLALLWD KIENFEKYAI DLIENKEVSG DVLFKNSSYS
601: IWVEDLRELK QLKAKVQRFP RQFTGFLDGE VVP

Best Arabidopsis Sequence Match ( AT3G52430.1 )
(BLAST)

001: MDDCRFETSE LQASVMISTP LFTDSWSSCN TANCNGSIKI HDIAGITYVA IPAVSMIQLG NLVGLPVTGD VLFPGLSSDE PLPMVDAAIL KLFLQLKIKE
101: GLELELLGKK LVVITGHSTG GALAAFTALW LLSQSSPPSF RVFCITFGSP LLGNQSLSTS ISRSRLAHNF CHVVSIHDLV PRSSNEQFWP FGTYLFCSDK
201: GGVCLDNAGS VRLMFNILNT TATQNTEEHQ RYGHYVFTLS HMFLKSRSFL GGSIPDNSYQ AGVALAVEAL GFSNDDTSGV LVKECIETAT RIVRAPILRS
301: AELANELASV LPARLEIQWY KDRCDASEEQ LGYYDFFKRY SLKRDFKVNM SRIRLAKFWD TVIKMVETNE LPFDFHLGKK WIYASQFYQL LAEPLDIANF
401: YKNRDIKTGG HYLEGNRPKR YEVIDKWQKG VKVPEECVRS RYASTTQDTC FWAKLEQAKE WLDEARKESS DPQRRSLLRE KIVPFESYAN TLVTKKEVSL
501: DVKAKNSSYS VWEANLKEFK CKMGYENEIE MVVDESDAME T

Arabidopsis Description

PAD4Lipase-like PAD4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S745]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.