Factsheet for Zm00001d053138_P002

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005708_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52430.1	Zm00001d005708_P001	AT3G48090.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004706_P002	Maize	cytosol, peroxisome, plastid	86.34	87.4
EES08158	Sorghum	cytosol, peroxisome, plastid	84.52	83.13
Os11t0195500-01	Rice	mitochondrion	56.9	70.09
TraesCS4D01G096400.2	Wheat	peroxisome	68.44	69.17
TraesCS4A01G216100.1	Wheat	peroxisome	67.68	68.51
TraesCS4B01G100100.1	Wheat	peroxisome	67.37	68.1
HORVU4Hr1G043530.1	Barley	mitochondrion	68.89	64.49
GSMUA_Achr6P12900_001	Banana	cytosol	46.13	50.41
GSMUA_Achr2P20660_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	41.88	45.25
PGSC0003DMT400051170	Potato	cytosol	36.12	41.18
Solyc02g032850.2.1	Tomato	cytosol	35.2	40.14
VIT_07s0031g02390.t01	Wine grape	cytosol	37.18	39.58
KRH53943	Soybean	cytosol, nucleus, peroxisome	37.63	39.18
KRH40959	Soybean	cytosol	37.03	38.55
CDY67344	Canola	plastid	25.04	38.37
KRH63997	Soybean	cytosol, nucleus, peroxisome	36.72	38.23
CDY23217	Canola	plastid	24.89	38.14
Bra033431.1-P	Field mustard	plastid	24.89	38.14
CDY69054	Canola	cytosol	25.19	37.56
CDY68190	Canola	cytosol	18.06	37.54
KRH59603	Soybean	plastid	28.53	35.95
Bra006922.1-P	Field mustard	cytosol, nucleus, peroxisome	29.14	35.1
CDX73637	Canola	cytosol, nucleus, peroxisome	29.14	35.04
CDX78091	Canola	cytosol, nucleus, peroxisome	28.98	34.92
AT3G52430.1	Thale cress	cytosol, nucleus, peroxisome	27.92	34.01
CDY29081	Canola	cytosol, endoplasmic reticulum, peroxisome	28.22	33.88
CDX90603	Canola	plasma membrane	28.22	29.52
Bra012805.1-P	Field mustard	plasma membrane	28.22	29.52
Zm00001d005708_P001	Maize	cytosol, nucleus, peroxisome, plastid	20.03	21.32

Protein Annotations

EntrezGene:103654608	MapMan:26.8.2.4.1	MapMan:26.8.2.4.2	Gene3D:3.40.50.1820	UniProt:A0A1D6QMC3	InterPro:AB_hydrolase
ProteinID:AQK58816.1	ncoils:Coil	InterPro:Fungal_lipase-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:IPR029058	PFAM:PF01764	PANTHER:PTHR21493
PANTHER:PTHR21493:SF130	SUPFAM:SSF53474	UniParc:UPI0004DEB366	EnsemblPlantsGene:Zm00001d053138	EnsemblPlants:Zm00001d053138_P002	EnsemblPlants:Zm00001d053138_T002
SEG:seg	:	:	:	:	:

Description

Lipase-like PAD4

Coordinates

chr4:+:215588067..215592113

Molecular Weight (calculated)

71724.2 Da

IEP (calculated)

6.781

GRAVY (calculated)

-0.183

Length

659 amino acids

Sequence
(BLAST)

001: MDDAAGEEEA SMFETSHVLG ALLASSPLLA SAWDRCTTAT AAAPGFVHGE DGGKVYVGFS GVQAALSAAG AAVAGGGADV FAPVGLGGDA AGRMFAPLLA
101: AEPDSSAAGE PVAVQALALQ CFLKLCGNPD FQMLLNEIRG KAVMFTGHSL GGAIATLAAL HYLCISSSSS PWSPAAPVLC VTFGSPLLGN EALSRAILRE
201: RWGGNFCHVV SQHDVVPRLL FCPPDAVPAH IIVGMQLDQW PARTRHTGAV NTVTTRMADT DKNALQQLIQ THMAAVAMEQ KLATPETTGG SPYRPFGTYV
301: LCSPEGAACV DNATAAAQML YATFASRSSP GAESPEAAHS CYGELVLKMP QHLLLKRCLR VDDTRATPNY DDGVSLALEA SGIDATVRAH AMEASTARQW
401: LKTSKRAGRR PSLNCACLAT QLGRITPLRA QIEWYKAVFD AEMGYYDAFK QRRSPRKYSK VNLNRMKLGQ FWDGVLTKLD AGQLPHDFHR RAKWVNAARF
501: YQLLVEPLDI ADYHHQGLHR TSGSYMTHGR ERRYELFDRW WQEKACTGAG GDITSSMLAA SASSRRRSKY AGLTQDPCFW ARVEEAREET ESARGERDVA
601: ELAMKLEELQ EFERYSRELV ANKEVSVDVL APQSSYTLWV EEWNQLKLRD EVRTLLLQF

Best Arabidopsis Sequence Match ( AT3G52430.1 )
(BLAST)

001: MDDCRFETSE LQASVMISTP LFTDSWSSCN TANCNGSIKI HDIAGITYVA IPAVSMIQLG NLVGLPVTGD VLFPGLSSDE PLPMVDAAIL KLFLQLKIKE
101: GLELELLGKK LVVITGHSTG GALAAFTALW LLSQSSPPSF RVFCITFGSP LLGNQSLSTS ISRSRLAHNF CHVVSIHDLV PRSSNEQFWP FGTYLFCSDK
201: GGVCLDNAGS VRLMFNILNT TATQNTEEHQ RYGHYVFTLS HMFLKSRSFL GGSIPDNSYQ AGVALAVEAL GFSNDDTSGV LVKECIETAT RIVRAPILRS
301: AELANELASV LPARLEIQWY KDRCDASEEQ LGYYDFFKRY SLKRDFKVNM SRIRLAKFWD TVIKMVETNE LPFDFHLGKK WIYASQFYQL LAEPLDIANF
401: YKNRDIKTGG HYLEGNRPKR YEVIDKWQKG VKVPEECVRS RYASTTQDTC FWAKLEQAKE WLDEARKESS DPQRRSLLRE KIVPFESYAN TLVTKKEVSL
501: DVKAKNSSYS VWEANLKEFK CKMGYENEIE MVVDESDAME T

Arabidopsis Description

PAD4Lipase-like PAD4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S745]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.