Factsheet for Solyc02g032850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g071280.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52430.1	Solyc06g071280.2.1	AT3G48090.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051170	Potato	cytosol	91.18	91.18
VIT_07s0031g02390.t01	Wine grape	cytosol	47.58	44.43
KRH40959	Soybean	cytosol	48.44	44.23
KRH53943	Soybean	cytosol, nucleus, peroxisome	48.1	43.92
KRH63997	Soybean	cytosol, nucleus, peroxisome	47.58	43.44
KRH59603	Soybean	plastid	37.72	41.68
CDY67344	Canola	plastid	30.8	41.4
Bra033431.1-P	Field mustard	plastid	30.45	40.93
CDY23217	Canola	plastid	30.45	40.93
GSMUA_Achr6P12900_001	Banana	cytosol	42.56	40.8
CDY69054	Canola	cytosol	29.76	38.91
GSMUA_Achr2P20660_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	40.66	38.52
CDY68190	Canola	cytosol	20.59	37.54
AT3G52430.1	Thale cress	cytosol, nucleus, peroxisome	35.12	37.52
CDY29081	Canola	cytosol, endoplasmic reticulum, peroxisome	35.64	37.52
CDX73637	Canola	cytosol, nucleus, peroxisome	35.47	37.41
Bra006922.1-P	Field mustard	cytosol, nucleus, peroxisome	34.6	36.56
CDX78091	Canola	cytosol, nucleus, peroxisome	34.43	36.38
TraesCS4D01G096400.2	Wheat	peroxisome	40.14	35.58
TraesCS4B01G100100.1	Wheat	peroxisome	40.14	35.58
Zm00001d053138_P002	Maize	cytosol, peroxisome, plastid	40.14	35.2
Zm00001d004706_P002	Maize	cytosol, peroxisome, plastid	39.45	35.02
TraesCS4A01G216100.1	Wheat	peroxisome	39.1	34.72
EES08158	Sorghum	cytosol, peroxisome, plastid	39.79	34.33
Os11t0195500-01	Rice	mitochondrion	31.49	34.02
HORVU4Hr1G043530.1	Barley	mitochondrion	39.97	32.81
CDX90603	Canola	plasma membrane	35.12	32.22
Bra012805.1-P	Field mustard	plasma membrane	35.12	32.22
Solyc02g067660.2.1	Tomato	plastid	23.7	24.16
Solyc06g071280.2.1	Tomato	cytosol	25.09	24.09
Solyc02g069400.2.1	Tomato	extracellular, nucleus, peroxisome	23.7	23.58

Protein Annotations

EnsemblPlants:Solyc02g032850.2.1	EnsemblPlantsGene:Solyc02g032850.2	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:AB_hydrolase	InterPro:Fungal_lipase-like	InterPro:IPR029058
ncoils:Coil	PANTHER:PTHR21493	PANTHER:PTHR21493:SF130	PFAM:PF01764	SEG:seg	SUPFAM:SSF53474
UniParc:UPI000276756D	UniProt:K4B5M9	MapMan:26.8.2.4.2	:	:	:

Description

No Description!

Coordinates

chr2:+:29420332..29430507

Molecular Weight (calculated)

65267.0 Da

IEP (calculated)

7.896

GRAVY (calculated)

-0.177

Length

578 amino acids

Sequence
(BLAST)

001: MVSEASSFES SETLAALVAS TPLLEESWKV CGVADASVGC NFAVNRVGET AYVGFSGVKL GAGVDQSCRN LVPLPDELFF SLCVDGPDPA MVHAGLLHLF
101: QSVYIDNLFR DQMVEIMNTS KSIVITGHSI GGAIASLLTL WLLCRLQTIC SVICITFGSP MLGNQSFSRA ILQKRWAGHF CHVVSQHDIV PRLFFAPSCC
201: FQFISYENKT QLFHVVLDSL GVVSRGECKS SFCPSGSYLF CTNKGAVCVD NGMVVIKLLY FTLLNSSQSS SLEDHLDYAD FIQKVQWQFI ENRSFTEGSI
301: PKSSYKAGIT LALESLGIAS HEVNFEDAKE ALKKAKKLGR TRNLNSANLA IGLSKINPFR AQIEWFKASC DNSAEQMGYY DSFKQRGASK RGFKVNMNRI
401: KLAQFWDSLI DKLEANELPY DFHKRAKWVN ASQFYKLVVE PLDIAEYYRT GMHLVKGHYM QHGRERRYKI FDKWWKTEND TDNPTARSRF ASSTQDSCFW
501: ARVEEARDSL IKVRAEGDAR KFLKMLEDVT KFDQYAKRLI ENKEISQDVL AKNSSYTKFI EEWKDLQSQL QLLQPQFP

Best Arabidopsis Sequence Match ( AT3G52430.1 )
(BLAST)

001: MDDCRFETSE LQASVMISTP LFTDSWSSCN TANCNGSIKI HDIAGITYVA IPAVSMIQLG NLVGLPVTGD VLFPGLSSDE PLPMVDAAIL KLFLQLKIKE
101: GLELELLGKK LVVITGHSTG GALAAFTALW LLSQSSPPSF RVFCITFGSP LLGNQSLSTS ISRSRLAHNF CHVVSIHDLV PRSSNEQFWP FGTYLFCSDK
201: GGVCLDNAGS VRLMFNILNT TATQNTEEHQ RYGHYVFTLS HMFLKSRSFL GGSIPDNSYQ AGVALAVEAL GFSNDDTSGV LVKECIETAT RIVRAPILRS
301: AELANELASV LPARLEIQWY KDRCDASEEQ LGYYDFFKRY SLKRDFKVNM SRIRLAKFWD TVIKMVETNE LPFDFHLGKK WIYASQFYQL LAEPLDIANF
401: YKNRDIKTGG HYLEGNRPKR YEVIDKWQKG VKVPEECVRS RYASTTQDTC FWAKLEQAKE WLDEARKESS DPQRRSLLRE KIVPFESYAN TLVTKKEVSL
501: DVKAKNSSYS VWEANLKEFK CKMGYENEIE MVVDESDAME T

Arabidopsis Description

PAD4Lipase-like PAD4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S745]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.