CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
peroxisome 2
plastid 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH54464
KRH54465
KRH54468
KRH63455

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52430.1	KRH54464	AT3G48090.1	11574472
AT3G52430.1	KRH54465	AT3G48090.1	11574472
AT3G52430.1	KRH54468	AT3G48090.1	11574472
AT3G52430.1	KRH63455	AT3G48090.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63997	Soybean	cytosol, nucleus, peroxisome	86.57	86.57
KRH59603	Soybean	plastid	54.5	65.97
KRH40959	Soybean	cytosol	65.4	65.4
VIT_07s0031g02390.t01	Wine grape	cytosol	52.45	53.63
PGSC0003DMT400051170	Potato	cytosol	44.55	48.79
Solyc02g032850.2.1	Tomato	cytosol	43.92	48.1
Bra033431.1-P	Field mustard	plastid	30.17	44.42
CDY23217	Canola	plastid	30.17	44.42
CDY67344	Canola	plastid	30.17	44.42
CDY69054	Canola	cytosol	29.7	42.53
CDX73637	Canola	cytosol, nucleus, peroxisome	36.65	42.34
GSMUA_Achr2P20660_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	40.44	41.97
Bra006922.1-P	Field mustard	cytosol, nucleus, peroxisome	36.18	41.86
CDY68190	Canola	cytosol	20.85	41.64
CDX78091	Canola	cytosol, nucleus, peroxisome	35.7	41.32
CDY29081	Canola	cytosol, endoplasmic reticulum, peroxisome	35.55	40.98
AT3G52430.1	Thale cress	cytosol, nucleus, peroxisome	34.76	40.67
GSMUA_Achr6P12900_001	Banana	cytosol	38.7	40.63
EES08158	Sorghum	cytosol, peroxisome, plastid	40.6	38.36
Zm00001d004706_P002	Maize	cytosol, peroxisome, plastid	38.86	37.79
Zm00001d053138_P002	Maize	cytosol, peroxisome, plastid	39.18	37.63
TraesCS4A01G216100.1	Wheat	peroxisome	38.39	37.33
TraesCS4B01G100100.1	Wheat	peroxisome	38.23	37.12
TraesCS4D01G096400.2	Wheat	peroxisome	38.07	36.96
Os11t0195500-01	Rice	mitochondrion	30.02	35.51
CDX90603	Canola	plasma membrane	35.23	35.4
Bra012805.1-P	Field mustard	plasma membrane	35.07	35.24
HORVU4Hr1G043530.1	Barley	mitochondrion	38.39	34.52
KRG93398	Soybean	cytosol	7.42	27.33
KRH18587	Soybean	endoplasmic reticulum, nucleus	21.01	22.85
KRH63455	Soybean	cytosol	21.48	22.22
KRH18578	Soybean	cytosol	13.11	22.19
KRH54468	Soybean	cytosol	21.48	22.04
KRG93399	Soybean	plastid	20.22	21.81
KRH54464	Soybean	cytosol, endoplasmic reticulum	21.33	21.77
KRH54465	Soybean	cytosol	20.06	20.65
KRH18585	Soybean	mitochondrion	16.27	19.36

Protein Annotations

EntrezGene:100815981	MapMan:26.8.2.4.2	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	EMBL:ACUP02003491	InterPro:Fungal_lipase-like
EnsemblPlantsGene:GLYMA_06G156300	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	InterPro:IPR029058	UniProt:K7KV97	EnsemblPlants:KRH53943	ProteinID:KRH53943	ProteinID:KRH53943.1
PFAM:PF01764	PANTHER:PTHR21493	PANTHER:PTHR21493:SF130	SUPFAM:SSF53474	UniParc:UPI0002338331	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:12816667..12823287

Molecular Weight (calculated)

71798.7 Da

IEP (calculated)

6.431

GRAVY (calculated)

-0.213

Length

633 amino acids

Sequence
(BLAST)

001: MVADEASPFE TSEMLATFLT STPLLSESWQ LCTTAAAAAP RSFVTEQRGG GVVYVAFPGV EMVAASTDSS WRNFVALDSI GDMPLFSARR LNKEGDEPVM
101: VHAGMLNLFS IFFEPFQKQM LAIMGDTNTK FIVITGHSIG GATASLCALW LLSYLHQISS FMSVSVLCIT FGSPMLGNGS FSRAILRERW GGNFCHVVSK
201: HDIMPRLLFA PITSYTTQLN FLLQFWQLSM TDPGFGKLAI SISDQQKELF DFVMSHLDAA THYGEGSAHV WFHPFGSYLF VSSEGAVCVD GANAVIKMMH
301: LMFASGSLAC SIEDHLKYGE YVKNLSLQFL NQNNSMQGSI HDSSYEAGLE LAVQSSGLAS QESEIEPAKE CLKMTRRMGP SPTKNAANLA ITLSKFVPYR
401: AEIEWYKAWC DQQVDQMGYY DLFKRRRSTS RMTMKVNMNR HKLARFWNNV IEKLETNELP HDLAVRAKWV NASHFYKLLV EPLDIAEYYG KGMHTTKGHY
501: IQHGRERRYE IFDRWWKDGM ANTEENNERR SKFASLTQDS CFWARVEEAR EWLDSVRSES DTTKLAVLWD NIEKFEKYAM ELVDNKEVSE DVLAKNSSYS
601: IWLEDLRGLR ELKAKVKRFS HHFNPFLDGE VIP

Best Arabidopsis Sequence Match ( AT3G52430.1 )
(BLAST)

001: MDDCRFETSE LQASVMISTP LFTDSWSSCN TANCNGSIKI HDIAGITYVA IPAVSMIQLG NLVGLPVTGD VLFPGLSSDE PLPMVDAAIL KLFLQLKIKE
101: GLELELLGKK LVVITGHSTG GALAAFTALW LLSQSSPPSF RVFCITFGSP LLGNQSLSTS ISRSRLAHNF CHVVSIHDLV PRSSNEQFWP FGTYLFCSDK
201: GGVCLDNAGS VRLMFNILNT TATQNTEEHQ RYGHYVFTLS HMFLKSRSFL GGSIPDNSYQ AGVALAVEAL GFSNDDTSGV LVKECIETAT RIVRAPILRS
301: AELANELASV LPARLEIQWY KDRCDASEEQ LGYYDFFKRY SLKRDFKVNM SRIRLAKFWD TVIKMVETNE LPFDFHLGKK WIYASQFYQL LAEPLDIANF
401: YKNRDIKTGG HYLEGNRPKR YEVIDKWQKG VKVPEECVRS RYASTTQDTC FWAKLEQAKE WLDEARKESS DPQRRSLLRE KIVPFESYAN TLVTKKEVSL
501: DVKAKNSSYS VWEANLKEFK CKMGYENEIE MVVDESDAME T

Arabidopsis Description

PAD4Lipase-like PAD4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S745]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.