Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
- mitochondrion 1
- plasma membrane 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS5A01G202200.2 | |
TraesCS5B01G200800.2 | |
TraesCS5D01G208600.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G52430.1 | TraesCS5A01G202200.2 | AT3G48090.1 | 11574472 |
AT3G52430.1 | TraesCS5B01G200800.2 | AT3G48090.1 | 11574472 |
AT3G52430.1 | TraesCS5D01G208600.1 | AT3G48090.1 | 11574472 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
HORVU4Hr1G043530.1 | Barley | mitochondrion | 94.78 | 87.64 |
TraesCS4D01G096400.2 | Wheat | peroxisome | 86.79 | 86.66 |
TraesCS4B01G100100.1 | Wheat | peroxisome | 86.64 | 86.5 |
Os11t0195500-01 | Rice | mitochondrion | 56.84 | 69.16 |
Zm00001d004706_P002 | Maize | cytosol, peroxisome, plastid | 68.36 | 68.36 |
EES08158 | Sorghum | cytosol, peroxisome, plastid | 69.74 | 67.76 |
Zm00001d053138_P002 | Maize | cytosol, peroxisome, plastid | 68.51 | 67.68 |
GSMUA_Achr6P12900_001 | Banana | cytosol | 44.55 | 48.09 |
GSMUA_Achr2P20660_001 | Banana | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 41.63 | 44.43 |
PGSC0003DMT400051170 | Potato | cytosol | 35.33 | 39.79 |
VIT_07s0031g02390.t01 | Wine grape | cytosol | 37.48 | 39.42 |
Solyc02g032850.2.1 | Tomato | cytosol | 34.72 | 39.1 |
KRH53943 | Soybean | cytosol, nucleus, peroxisome | 37.33 | 38.39 |
CDY23217 | Canola | plastid | 25.04 | 37.91 |
Bra033431.1-P | Field mustard | plastid | 25.04 | 37.91 |
KRH63997 | Soybean | cytosol, nucleus, peroxisome | 36.71 | 37.76 |
CDY67344 | Canola | plastid | 24.88 | 37.67 |
KRH40959 | Soybean | cytosol | 35.94 | 36.97 |
CDY69054 | Canola | cytosol | 24.12 | 35.52 |
AT3G52430.1 | Thale cress | cytosol, nucleus, peroxisome | 28.88 | 34.75 |
CDY68190 | Canola | cytosol | 16.9 | 34.7 |
CDY29081 | Canola | cytosol, endoplasmic reticulum, peroxisome | 28.88 | 34.24 |
KRH59603 | Soybean | plastid | 27.34 | 34.03 |
CDX78091 | Canola | cytosol, nucleus, peroxisome | 28.26 | 33.64 |
Bra006922.1-P | Field mustard | cytosol, nucleus, peroxisome | 28.26 | 33.64 |
CDX73637 | Canola | cytosol, nucleus, peroxisome | 28.26 | 33.58 |
CDX90603 | Canola | plasma membrane | 28.26 | 29.21 |
Bra012805.1-P | Field mustard | plasma membrane | 28.26 | 29.21 |
TraesCS5A01G202200.2 | Wheat | cytosol, nucleus, peroxisome, plastid | 21.66 | 22.6 |
Protein Annotations
EnsemblPlants:TraesCS4A01G216100.1 | EnsemblPlantsGene:TraesCS4A01G216100 | Gene3D:3.40.50.1820 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 |
InterPro:AB_hydrolase | InterPro:Fungal_lipase-like | InterPro:IPR029058 | PANTHER:PTHR21493 | PANTHER:PTHR21493:SF130 | PFAM:PF01764 |
SEG:seg | SUPFAM:SSF53474 | TIGR:cd00519 | MapMan:26.8.2.4.2 | : | : |
Description
No Description!
Coordinates
chr4A:-:514429586..514433273
Molecular Weight (calculated)
70785.5 Da
IEP (calculated)
7.773
GRAVY (calculated)
-0.117
Length
651 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDAEENSMF ETSHVLGALL ASSPLLARAW DRCAAAAAMG AASSGFAHGD GGGDGGTVYV AFSGLQAALS VARPAVASGA DVFAPVGLAG DATGARAFPQ
101: LAAAEPDAAA AGERVAVQAL ALRCFLKLCG SPEFQMLLNQ IQGKAVVFTG HSLGGAIAAL VALHYLCISS LSSPCSPSPP VLCVTFGSPL IGNGALSRAI
201: LRERWGGNFC NVVSQHDVVP RLLFCPLDAI PVRVIIGMQL QQWPGHTHNT GVMTTRVVDA EQDGLRQLIQ AHVRTVAMEQ KLVDPESRGG SPYRPFGAYV
301: LCSPEGAVCV DNSTAAVQML YATFAACYAR GNTTSLEAAH SCYGDLVLKM PQNLLLKRRP HAMDVLASMS NSNYDAGISL AMEASGIGSE AMEATTTRYW
401: LKASKRAGRS PSLNCAGLST RLGRITPCRA QVEWYKASFD GDMGYYDAFK QRRSPKKFNM ADMCRIKLGQ FWDGVLAMLD NSQLPHDFHR RAKWVNAARF
501: YQLLVEPLDI ADYHRKNFHK TRGGYITHGR DSRYELFDKW WKEKGAFTGT STGDTAATAR SKYAGLTQDP CFWARVEEAW DQTESAQAEQ DVAMLAMKLG
601: RLREFERYAR ELVESKEVSI DVLAPQSSYT RWVEEWKKLL LRDEARTASL F
101: LAAAEPDAAA AGERVAVQAL ALRCFLKLCG SPEFQMLLNQ IQGKAVVFTG HSLGGAIAAL VALHYLCISS LSSPCSPSPP VLCVTFGSPL IGNGALSRAI
201: LRERWGGNFC NVVSQHDVVP RLLFCPLDAI PVRVIIGMQL QQWPGHTHNT GVMTTRVVDA EQDGLRQLIQ AHVRTVAMEQ KLVDPESRGG SPYRPFGAYV
301: LCSPEGAVCV DNSTAAVQML YATFAACYAR GNTTSLEAAH SCYGDLVLKM PQNLLLKRRP HAMDVLASMS NSNYDAGISL AMEASGIGSE AMEATTTRYW
401: LKASKRAGRS PSLNCAGLST RLGRITPCRA QVEWYKASFD GDMGYYDAFK QRRSPKKFNM ADMCRIKLGQ FWDGVLAMLD NSQLPHDFHR RAKWVNAARF
501: YQLLVEPLDI ADYHRKNFHK TRGGYITHGR DSRYELFDKW WKEKGAFTGT STGDTAATAR SKYAGLTQDP CFWARVEEAW DQTESAQAEQ DVAMLAMKLG
601: RLREFERYAR ELVESKEVSI DVLAPQSSYT RWVEEWKKLL LRDEARTASL F
001: MDDCRFETSE LQASVMISTP LFTDSWSSCN TANCNGSIKI HDIAGITYVA IPAVSMIQLG NLVGLPVTGD VLFPGLSSDE PLPMVDAAIL KLFLQLKIKE
101: GLELELLGKK LVVITGHSTG GALAAFTALW LLSQSSPPSF RVFCITFGSP LLGNQSLSTS ISRSRLAHNF CHVVSIHDLV PRSSNEQFWP FGTYLFCSDK
201: GGVCLDNAGS VRLMFNILNT TATQNTEEHQ RYGHYVFTLS HMFLKSRSFL GGSIPDNSYQ AGVALAVEAL GFSNDDTSGV LVKECIETAT RIVRAPILRS
301: AELANELASV LPARLEIQWY KDRCDASEEQ LGYYDFFKRY SLKRDFKVNM SRIRLAKFWD TVIKMVETNE LPFDFHLGKK WIYASQFYQL LAEPLDIANF
401: YKNRDIKTGG HYLEGNRPKR YEVIDKWQKG VKVPEECVRS RYASTTQDTC FWAKLEQAKE WLDEARKESS DPQRRSLLRE KIVPFESYAN TLVTKKEVSL
501: DVKAKNSSYS VWEANLKEFK CKMGYENEIE MVVDESDAME T
101: GLELELLGKK LVVITGHSTG GALAAFTALW LLSQSSPPSF RVFCITFGSP LLGNQSLSTS ISRSRLAHNF CHVVSIHDLV PRSSNEQFWP FGTYLFCSDK
201: GGVCLDNAGS VRLMFNILNT TATQNTEEHQ RYGHYVFTLS HMFLKSRSFL GGSIPDNSYQ AGVALAVEAL GFSNDDTSGV LVKECIETAT RIVRAPILRS
301: AELANELASV LPARLEIQWY KDRCDASEEQ LGYYDFFKRY SLKRDFKVNM SRIRLAKFWD TVIKMVETNE LPFDFHLGKK WIYASQFYQL LAEPLDIANF
401: YKNRDIKTGG HYLEGNRPKR YEVIDKWQKG VKVPEECVRS RYASTTQDTC FWAKLEQAKE WLDEARKESS DPQRRSLLRE KIVPFESYAN TLVTKKEVSL
501: DVKAKNSSYS VWEANLKEFK CKMGYENEIE MVVDESDAME T
Arabidopsis Description
PAD4Lipase-like PAD4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S745]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.