Factsheet for PGSC0003DMT400051170

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400083030

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52430.1	PGSC0003DMT400083030	AT3G48090.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g032850.2.1	Tomato	cytosol	91.18	91.18
KRH40959	Soybean	cytosol	49.65	45.34
VIT_07s0031g02390.t01	Wine grape	cytosol	48.1	44.91
KRH53943	Soybean	cytosol, nucleus, peroxisome	48.79	44.55
KRH63997	Soybean	cytosol, nucleus, peroxisome	47.92	43.76
KRH59603	Soybean	plastid	38.93	43.02
GSMUA_Achr6P12900_001	Banana	cytosol	43.25	41.46
Bra033431.1-P	Field mustard	plastid	30.45	40.93
CDY23217	Canola	plastid	30.45	40.93
CDY67344	Canola	plastid	30.45	40.93
CDY69054	Canola	cytosol	30.62	40.05
GSMUA_Achr2P20660_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	41.52	39.34
CDY68190	Canola	cytosol	21.45	39.12
CDX73637	Canola	cytosol, nucleus, peroxisome	37.02	39.05
CDY29081	Canola	cytosol, endoplasmic reticulum, peroxisome	36.33	38.25
AT3G52430.1	Thale cress	cytosol, nucleus, peroxisome	35.64	38.08
Bra006922.1-P	Field mustard	cytosol, nucleus, peroxisome	35.99	38.03
CDX78091	Canola	cytosol, nucleus, peroxisome	35.81	37.84
TraesCS4B01G100100.1	Wheat	peroxisome	40.83	36.2
TraesCS4D01G096400.2	Wheat	peroxisome	40.83	36.2
Zm00001d053138_P002	Maize	cytosol, peroxisome, plastid	41.18	36.12
Zm00001d004706_P002	Maize	cytosol, peroxisome, plastid	40.66	36.1
TraesCS4A01G216100.1	Wheat	peroxisome	39.79	35.33
EES08158	Sorghum	cytosol, peroxisome, plastid	40.83	35.22
Os11t0195500-01	Rice	mitochondrion	31.83	34.39
HORVU4Hr1G043530.1	Barley	mitochondrion	40.83	33.52
CDX90603	Canola	plasma membrane	35.64	32.7
Bra012805.1-P	Field mustard	plasma membrane	35.64	32.7
PGSC0003DMT400089805	Potato	cytosol	7.27	29.37
PGSC0003DMT400083030	Potato	cytosol	25.43	25.13
PGSC0003DMT400017886	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	22.84	22.92
PGSC0003DMT400054651	Potato	extracellular, nucleus, peroxisome	22.84	22.92

Protein Annotations

EntrezGene:102579438	MapMan:26.8.2.4.2	Gene3D:3.40.50.1820	ProteinID:AAW82883	ProteinID:AAW82883.1	ProteinID:AAW82884
ProteinID:AAW82884.1	InterPro:AB_hydrolase	EMBL:AY753546	EMBL:AY753547	ncoils:Coil	InterPro:Fungal_lipase-like
GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:IPR029058	UniProt:M1BRD9	PFAM:PF01764	EnsemblPlantsGene:PGSC0003DMG400019873	PGSC:PGSC0003DMG400019873	EnsemblPlants:PGSC0003DMT400051170
PANTHER:PTHR21493	PANTHER:PTHR21493:SF130	SUPFAM:SSF53474	UniParc:UPI000295D3E8	RefSeq:XP_006350479.1	SEG:seg

Description

Phytoalexin-deficient 4-2 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019873]

Coordinates

chr2:+:17172921..17178504

Molecular Weight (calculated)

65006.4 Da

IEP (calculated)

6.774

GRAVY (calculated)

-0.194

Length

578 amino acids

Sequence
(BLAST)

001: MESEASSFES SETLAALVAS TPLLEESWKV CGVADALVDS NFAVNRVGGT AYVGFSGVKL GAGVDQSCLN LVPLPDELFS SLCLDGADPA MVHAGLLQLF
101: QSVYSDNLFR DQMVEIMNTS KSIVITGHSI GGAIASLLTL WLLCRLQTIC SVICITFGSP MLGNESFSRV ILQKRWAGHF CHVVSQHDIV PRLFFSPSCS
201: FQFISEENKT QLFRVVLDSL GVVSRGECKS SFCPSGSYLF CTNNGAVCVD NGMVVIKLLY LTLLNGSQSS SLEDHLGYAD FIRKVQWQFI ENRSFMGGNI
301: PESSYEAGIT LALESLGIAS HELNSEDAKE ALKKAKKLGR TRNLNSANLA IGLSKINPFR AQIEWYKTSC DNSVEQMGYY DSFKQRGASR RGFKVNMNRI
401: KLGQFWDSLI DKLEANELPY DFHKRAKWVN ASQFYKLVVE PLDIAEYYRT GMHLVKGHYM QHGRERRYKI FDKWWNTENG TDHPTARSRF ASSTQDSCFW
501: AQVEEARDGL IKVRAESDAR KFIKMLEDVT KFDQYAKRLI ENKEVSQDVL AKNSSYTKFI EEWNDFQSQL QLLQPQFP

Best Arabidopsis Sequence Match ( AT3G52430.1 )
(BLAST)

001: MDDCRFETSE LQASVMISTP LFTDSWSSCN TANCNGSIKI HDIAGITYVA IPAVSMIQLG NLVGLPVTGD VLFPGLSSDE PLPMVDAAIL KLFLQLKIKE
101: GLELELLGKK LVVITGHSTG GALAAFTALW LLSQSSPPSF RVFCITFGSP LLGNQSLSTS ISRSRLAHNF CHVVSIHDLV PRSSNEQFWP FGTYLFCSDK
201: GGVCLDNAGS VRLMFNILNT TATQNTEEHQ RYGHYVFTLS HMFLKSRSFL GGSIPDNSYQ AGVALAVEAL GFSNDDTSGV LVKECIETAT RIVRAPILRS
301: AELANELASV LPARLEIQWY KDRCDASEEQ LGYYDFFKRY SLKRDFKVNM SRIRLAKFWD TVIKMVETNE LPFDFHLGKK WIYASQFYQL LAEPLDIANF
401: YKNRDIKTGG HYLEGNRPKR YEVIDKWQKG VKVPEECVRS RYASTTQDTC FWAKLEQAKE WLDEARKESS DPQRRSLLRE KIVPFESYAN TLVTKKEVSL
501: DVKAKNSSYS VWEANLKEFK CKMGYENEIE MVVDESDAME T

Arabidopsis Description

PAD4Lipase-like PAD4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S745]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.