Factsheet for TraesCS4D01G096400.2

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	peroxisome, plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G202200.2
TraesCS5B01G200800.2
TraesCS5D01G208600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52430.1	TraesCS5A01G202200.2	AT3G48090.1	11574472
AT3G52430.1	TraesCS5B01G200800.2	AT3G48090.1	11574472
AT3G52430.1	TraesCS5D01G208600.1	AT3G48090.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G100100.1	Wheat	peroxisome	97.24	97.24
TraesCS4A01G216100.1	Wheat	peroxisome	86.66	86.79
HORVU4Hr1G043530.1	Barley	mitochondrion	86.04	79.69
Os11t0195500-01	Rice	mitochondrion	57.98	70.65
Zm00001d053138_P002	Maize	cytosol, peroxisome, plastid	69.17	68.44
Zm00001d004706_P002	Maize	cytosol, peroxisome, plastid	68.1	68.2
EES08158	Sorghum	cytosol, peroxisome, plastid	67.48	65.67
GSMUA_Achr6P12900_001	Banana	cytosol	44.02	47.6
GSMUA_Achr2P20660_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	41.72	44.59
PGSC0003DMT400051170	Potato	cytosol	36.2	40.83
Solyc02g032850.2.1	Tomato	cytosol	35.58	40.14
VIT_07s0031g02390.t01	Wine grape	cytosol	37.88	39.9
KRH53943	Soybean	cytosol, nucleus, peroxisome	36.96	38.07
CDY67344	Canola	plastid	25.0	37.91
CDY23217	Canola	plastid	25.0	37.91
Bra033431.1-P	Field mustard	plastid	25.0	37.91
KRH40959	Soybean	cytosol	36.35	37.44
KRH63997	Soybean	cytosol, nucleus, peroxisome	36.2	37.28
CDY69054	Canola	cytosol	24.54	36.2
CDY68190	Canola	cytosol	17.18	35.33
AT3G52430.1	Thale cress	cytosol, nucleus, peroxisome	28.83	34.75
KRH59603	Soybean	plastid	27.76	34.61
CDX78091	Canola	cytosol, nucleus, peroxisome	28.53	34.0
Bra006922.1-P	Field mustard	cytosol, nucleus, peroxisome	28.53	34.0
CDX73637	Canola	cytosol, nucleus, peroxisome	28.53	33.94
CDY29081	Canola	cytosol, endoplasmic reticulum, peroxisome	28.37	33.7
CDX90603	Canola	plasma membrane	28.07	29.05
Bra012805.1-P	Field mustard	plasma membrane	28.07	29.05
TraesCS5D01G208600.1	Wheat	plastid	22.39	23.43

Protein Annotations

EnsemblPlants:TraesCS4D01G096400.2	EnsemblPlantsGene:TraesCS4D01G096400	Gene3D:3.40.50.1820	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
InterPro:AB_hydrolase	InterPro:Fungal_lipase-like	InterPro:IPR029058	PANTHER:PTHR21493	PANTHER:PTHR21493:SF130	PFAM:PF01764
SEG:seg	SUPFAM:SSF53474	MapMan:26.8.2.4.1	MapMan:26.8.2.4.2	:	:

Description

No Description!

Coordinates

chr4D:+:72908328..72911934

Molecular Weight (calculated)

70893.4 Da

IEP (calculated)

7.537

GRAVY (calculated)

-0.126

Length

652 amino acids

Sequence
(BLAST)

001: MEDAEENSMF ETSHVLGALL ASSPLLARAW DRCAAAAAMG AASSGFAHGD GGGDGGTVYV AFSGLQAALS VARPAVASGA DVFAPVGLGG DAAGARAFPQ
101: LAAAEPDAAA AGERVAVQAL ALRCFLKLCG SPEFQMLLNQ IRGKAVVFTG HSLGGAIAAL AALHYLCISS LSSSCSPSPV LCVTFGSPLL GNEALSRAIL
201: RERWGGNFCN VVSQHDVVPR LLFCPLDAVP VHVIIGMQLQ QWPGHTHHTG VMTTRVVDAE QEGLRQLIQA HVRTVAMEQK LVDPESRGGS PYRPFGAYVL
301: CSPEGAACVD NSTAAVQMLY ATFAACYTRG DTTSLEAAHS CYGDLVLKMP QNLLLKRHLH AMDVLASMSN SNYDAGISLA MEASGIGSEA TEATTARYWL
401: KASKRAGRSP SLNCAGLSTR LGRITPCRAQ IEWYKASFDA DMGYYDAFKQ QRSPKKFGKA NIYRLKLGQF WDGVLTMLDN SQLPHDFHRR AKWVNAARFY
501: QLLVEPLDIA DYHRNNLHKT RGGYITHGRD RRYELFDKWW KEKGAFSGTS TGDTSVTATA RSKYAGLTQD PCFWARVEEA WDQTESAQAE HDVAMLAMKL
601: GRLREFERYA RELVESKEVS IDVLAPQSSY TRWVEEWKKL LLRDEARTAS LF

Best Arabidopsis Sequence Match ( AT3G52430.1 )
(BLAST)

001: MDDCRFETSE LQASVMISTP LFTDSWSSCN TANCNGSIKI HDIAGITYVA IPAVSMIQLG NLVGLPVTGD VLFPGLSSDE PLPMVDAAIL KLFLQLKIKE
101: GLELELLGKK LVVITGHSTG GALAAFTALW LLSQSSPPSF RVFCITFGSP LLGNQSLSTS ISRSRLAHNF CHVVSIHDLV PRSSNEQFWP FGTYLFCSDK
201: GGVCLDNAGS VRLMFNILNT TATQNTEEHQ RYGHYVFTLS HMFLKSRSFL GGSIPDNSYQ AGVALAVEAL GFSNDDTSGV LVKECIETAT RIVRAPILRS
301: AELANELASV LPARLEIQWY KDRCDASEEQ LGYYDFFKRY SLKRDFKVNM SRIRLAKFWD TVIKMVETNE LPFDFHLGKK WIYASQFYQL LAEPLDIANF
401: YKNRDIKTGG HYLEGNRPKR YEVIDKWQKG VKVPEECVRS RYASTTQDTC FWAKLEQAKE WLDEARKESS DPQRRSLLRE KIVPFESYAN TLVTKKEVSL
501: DVKAKNSSYS VWEANLKEFK CKMGYENEIE MVVDESDAME T

Arabidopsis Description

PAD4Lipase-like PAD4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S745]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.