Factsheet for VIT_07s0031g02390.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g07370.t01
VIT_17s0000g07400.t01
VIT_17s0000g07420.t01
VIT_17s0000g07560.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52430.1	VIT_17s0000g07370.t01	AT3G48090.1	11574472
AT3G52430.1	VIT_17s0000g07400.t01	AT3G48090.1	11574472
AT3G52430.1	VIT_17s0000g07420.t01	AT3G48090.1	11574472
AT3G52430.1	VIT_17s0000g07560.t01	AT3G48090.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53943	Soybean	cytosol, nucleus, peroxisome	53.63	52.45
KRH40959	Soybean	cytosol	52.34	51.18
KRH63997	Soybean	cytosol, nucleus, peroxisome	52.18	51.03
KRH59603	Soybean	plastid	42.81	50.67
PGSC0003DMT400051170	Potato	cytosol	44.91	48.1
Solyc02g032850.2.1	Tomato	cytosol	44.43	47.58
CDY67344	Canola	plastid	32.15	46.28
Bra033431.1-P	Field mustard	plastid	31.83	45.81
CDY23217	Canola	plastid	31.83	45.81
CDY69054	Canola	cytosol	31.5	44.12
CDY68190	Canola	cytosol	22.29	43.53
AT3G52430.1	Thale cress	cytosol, nucleus, peroxisome	37.8	43.25
CDX73637	Canola	cytosol, nucleus, peroxisome	37.64	42.52
CDY29081	Canola	cytosol, endoplasmic reticulum, peroxisome	37.64	42.44
Bra006922.1-P	Field mustard	cytosol, nucleus, peroxisome	37.16	42.05
GSMUA_Achr6P12900_001	Banana	cytosol	40.87	41.96
CDX78091	Canola	cytosol, nucleus, peroxisome	36.83	41.68
GSMUA_Achr2P20660_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	41.03	41.64
Zm00001d004706_P002	Maize	cytosol, peroxisome, plastid	40.39	38.4
EES08158	Sorghum	cytosol, peroxisome, plastid	41.36	38.21
TraesCS4D01G096400.2	Wheat	peroxisome	39.9	37.88
TraesCS4B01G100100.1	Wheat	peroxisome	39.9	37.88
Os11t0195500-01	Rice	mitochondrion	32.47	37.57
TraesCS4A01G216100.1	Wheat	peroxisome	39.42	37.48
Zm00001d053138_P002	Maize	cytosol, peroxisome, plastid	39.58	37.18
CDX90603	Canola	plasma membrane	37.16	36.51
Bra012805.1-P	Field mustard	plasma membrane	37.0	36.35
HORVU4Hr1G043530.1	Barley	mitochondrion	40.06	35.23
VIT_14s0066g01820.t01	Wine grape	cytosol	19.71	24.4
VIT_17s0000g07560.t01	Wine grape	cytosol	23.42	24.33
VIT_05s0077g01720.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	21.49	23.54
VIT_17s0000g07370.t01	Wine grape	cytosol	22.62	23.33
VIT_05s0077g01750.t01	Wine grape	extracellular, plasma membrane	21.0	23.13
VIT_17s0000g07420.t01	Wine grape	cytosol	22.46	21.82
VIT_14s0066g01840.t01	Wine grape	mitochondrion	11.63	21.69
VIT_14s0066g01810.t01	Wine grape	cytosol	20.68	21.26
VIT_17s0000g07400.t01	Wine grape	plastid	15.83	14.63
VIT_05s0077g01730.t01	Wine grape	cytosol	20.84	12.37
VIT_14s0066g01830.t01	Wine grape	mitochondrion	21.0	11.25

Protein Annotations

EntrezGene:100257796	wikigene:100257796	MapMan:26.8.2.4.1	MapMan:26.8.2.4.2	Gene3D:3.40.50.1820	InterPro:AB_hydrolase
ProteinID:CCB47151	ProteinID:CCB47151.1	UniProt:F6H4E0	EMBL:FN595233	InterPro:Fungal_lipase-like	GO:GO:0001666
GO:GO:0002213	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006629	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009058	GO:GO:0009605
GO:GO:0009607	GO:GO:0009617	GO:GO:0009625	GO:GO:0009627	GO:GO:0009628	GO:GO:0009653
GO:GO:0009719	GO:GO:0009751	GO:GO:0009816	GO:GO:0009862	GO:GO:0009987	GO:GO:0010105
GO:GO:0010150	GO:GO:0010225	GO:GO:0010310	GO:GO:0010618	GO:GO:0010942	GO:GO:0016787
GO:GO:0019748	GO:GO:0031348	GO:GO:0051707	GO:GO:0071327	GO:GO:0080142	GO:GO:0080151
GO:GO:1900367	GO:GO:1900426	GO:GO:1901183	GO:GO:2000022	GO:GO:2000031	InterPro:IPR029058
EntrezGene:LOC100257796	wikigene:LOC100257796	PFAM:PF01764	PANTHER:PTHR21493	PANTHER:PTHR21493:SF130	SUPFAM:SSF53474
TIGR:TC58711	UniParc:UPI0001983B38	ArrayExpress:VIT_07s0031g02390	EnsemblPlantsGene:VIT_07s0031g02390	EnsemblPlants:VIT_07s0031g02390.t01	unigene:Vvi.11430
RefSeq:XP_002275637	RefSeq:XP_002275637.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:18535988..18540420

Molecular Weight (calculated)

69479.6 Da

IEP (calculated)

6.558

GRAVY (calculated)

-0.261

Length

619 amino acids

Sequence
(BLAST)

001: MDAETSLFES SEMLATFISS TPVLQDSWRL CSLANTSASV VTDQVRGIAY VAFSGTIMPP LADPSCANLE ALDRPPDGLF PPLQQRHAQH QHEDPPMLHA
101: AILHHFLSLY TSPAFLNQIL TVIEKSKAVV MTGHSMGGAV ASLSALWLLS HLQSTSSALP VLCITFGSPL LGNEALSRAI LRERWAGNFC HVVSNHDFVP
201: RLFLAPLPSL STQQPHFVRQ FWHLLMTSLQ SVSETIQLFR SVLPFVQASA ATTGEGWVKS PFSPFGNYLF FSEEGAVCVN DAAAAVKMLE LMFTTASPGS
301: SIEDHLKYGD YVGKASWQLL MRKSFTQGEP PESSYEAGVA LAVQSCGLAG QESIAGPAKD CLKMAKRVNP LPPHLNSANL AITLSKNVPY RAQIEWFKAS
401: CDKSDDQMGY YDSFKLRGAS KKGAKINMNR CLLAGFWDNV IYMLESNQLP HDFNKRAKWV NASQFYKLLV EPLDIAEYYR TGKHRTQGHY LKNGREKRYE
501: IFDRWWKGRE AGDEENNKRT SYASLTQDSC FWARVEEAKD WLDQVRSESD TGRSDMLWQD IDRFESYATR LVENKEVSID VLAKNSSFTL LMEELQDFKK
601: KTQQFPPQFP AFWNEEMVP

Best Arabidopsis Sequence Match ( AT3G52430.1 )
(BLAST)

001: MDDCRFETSE LQASVMISTP LFTDSWSSCN TANCNGSIKI HDIAGITYVA IPAVSMIQLG NLVGLPVTGD VLFPGLSSDE PLPMVDAAIL KLFLQLKIKE
101: GLELELLGKK LVVITGHSTG GALAAFTALW LLSQSSPPSF RVFCITFGSP LLGNQSLSTS ISRSRLAHNF CHVVSIHDLV PRSSNEQFWP FGTYLFCSDK
201: GGVCLDNAGS VRLMFNILNT TATQNTEEHQ RYGHYVFTLS HMFLKSRSFL GGSIPDNSYQ AGVALAVEAL GFSNDDTSGV LVKECIETAT RIVRAPILRS
301: AELANELASV LPARLEIQWY KDRCDASEEQ LGYYDFFKRY SLKRDFKVNM SRIRLAKFWD TVIKMVETNE LPFDFHLGKK WIYASQFYQL LAEPLDIANF
401: YKNRDIKTGG HYLEGNRPKR YEVIDKWQKG VKVPEECVRS RYASTTQDTC FWAKLEQAKE WLDEARKESS DPQRRSLLRE KIVPFESYAN TLVTKKEVSL
501: DVKAKNSSYS VWEANLKEFK CKMGYENEIE MVVDESDAME T

Arabidopsis Description

PAD4Lipase-like PAD4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S745]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.