Factsheet for VIT_17s0000g07560.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0031g02390.t01
VIT_17s0000g07370.t01
VIT_17s0000g07400.t01
VIT_17s0000g07420.t01
VIT_17s0000g07560.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48090.1	VIT_17s0000g07370.t01	AT3G48090.1	11574472
AT3G48090.1	VIT_17s0000g07400.t01	AT3G48090.1	11574472
AT3G48090.1	VIT_17s0000g07420.t01	AT3G48090.1	11574472
AT3G48090.1	VIT_17s0000g07560.t01	AT3G48090.1	11574472
AT3G48090.1	VIT_07s0031g02390.t01	AT3G52430.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g07370.t01	Wine grape	cytosol	67.62	67.17
VIT_17s0000g07420.t01	Wine grape	cytosol	64.77	60.6
PGSC0003DMT400083030	Potato	cytosol	51.68	52.65
Solyc06g071280.2.1	Tomato	cytosol	51.68	51.16
KRH63455	Soybean	cytosol	49.66	48.37
KRH54468	Soybean	cytosol	49.16	47.49
KRH54465	Soybean	cytosol	48.99	47.48
KRH54464	Soybean	cytosol, endoplasmic reticulum	45.81	44.03
VIT_17s0000g07400.t01	Wine grape	plastid	47.82	42.54
GSMUA_Achr8P25290_001	Banana	plastid	45.64	42.3
TraesCS5D01G208600.1	Wheat	plastid	41.95	40.13
Os09t0392100-01	Rice	cytosol, nucleus, peroxisome, plastid	41.78	40.1
TraesCS5A01G202200.2	Wheat	cytosol, nucleus, peroxisome, plastid	41.95	40.06
CDX83034	Canola	cytosol, extracellular, plastid	34.9	39.54
KXG35573	Sorghum	cytosol, nucleus, peroxisome	40.6	39.54
TraesCS5B01G200800.2	Wheat	cytosol, nucleus, peroxisome, plastid	38.76	39.42
CDX68479	Canola	cytosol, extracellular, plastid	34.73	39.35
Zm00001d005708_P001	Maize	cytosol, nucleus, peroxisome, plastid	40.77	39.26
Bra033774.1-P	Field mustard	cytosol	38.09	38.34
HORVU5Hr1G060060.2	Barley	plastid	42.28	38.07
CDY68128	Canola	cytosol	37.25	37.0
AT3G48080.1	Thale cress	cytosol	38.93	36.88
CDY44979	Canola	cytosol	37.08	36.83
Bra018085.1-P	Field mustard	cytosol	36.91	36.67
AT3G48090.1	Thale cress	cytosol	37.58	35.96
Bra033775.1-P	Field mustard	cytosol	36.07	35.83
CDX83035	Canola	cytosol	33.22	34.14
CDX68481	Canola	cytosol	27.52	32.48
VIT_14s0066g01820.t01	Wine grape	cytosol	20.47	24.4
VIT_07s0031g02390.t01	Wine grape	cytosol	24.33	23.42
VIT_05s0077g01720.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	21.31	22.48
VIT_05s0077g01750.t01	Wine grape	extracellular, plasma membrane	20.81	22.06
VIT_14s0066g01840.t01	Wine grape	mitochondrion	11.74	21.08
VIT_14s0066g01810.t01	Wine grape	cytosol	21.14	20.93
VIT_05s0077g01730.t01	Wine grape	cytosol	20.47	11.7
VIT_14s0066g01830.t01	Wine grape	mitochondrion	20.81	10.73

Protein Annotations

EntrezGene:100233033	wikigene:100233033	MapMan:26.8.2.4.1	Gene3D:3.40.50.1820	ProteinID:ABU43059	ProteinID:ABU43059.1
InterPro:AB_hydrolase	ProteinID:AEM75095	ProteinID:AEM75095.1	ProteinID:AEM75096	ProteinID:AEM75096.1	ProteinID:CCB43018
ProteinID:CCB43018.1	ncoils:Coil	EntrezGene:EDS1	wikigene:EDS1	EMBL:EF551159	UniProt:F6GSX7
EMBL:FN594950	InterPro:Fungal_lipase-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	InterPro:IPR029058	EMBL:JF436934	EMBL:JF436935	PFAM:PF01764
PANTHER:PTHR21493	PANTHER:PTHR21493:SF94	SUPFAM:SSF53474	TIGR:TC55328	UniParc:UPI00015C8403	ArrayExpress:VIT_17s0000g07560
EnsemblPlantsGene:VIT_17s0000g07560	EnsemblPlants:VIT_17s0000g07560.t01	unigene:Vvi.1390	RefSeq:XP_010663021.1	:	:

Description

No Description!

Coordinates

chr17:-:8554067..8556246

Molecular Weight (calculated)

68303.4 Da

IEP (calculated)

6.795

GRAVY (calculated)

-0.430

Length

596 amino acids

Sequence
(BLAST)

001: MGETLGNRIR LSEEIVNRAA SQAMRAHNSA GRPFLLDKTR GFAIFAFAGS WLPDDWFTHP PFGETKMDAS TFPSLRSVGN DEVAVVNASF LRRFKAILDQ
101: LPLEREVQKV IADRRQVVFT GHSWGGAMAI LATLYFLEKA GPNQNPPRCI TFGSPLVGDR IFGHAVRREK WSDHFIHFVM RFDVIPRIML GPASTEHQQI
201: LNFFNPRSQF YREPLDPPLG FYLNVMRSAS SVAIHDACIL MGCTNPLLET LRNFTELSPY RPFGTYIFCT GNGKLVVLKN PDAVLQILFY CAQLSQEEAA
301: EIAQRSLHEH LAYENELQES LGMQNVVYLD SLEDLPLSSN GGPATVNIAL NDLGLSPQAR LCLRAAGGFE NRRLRNQVKI DDNKQKINDE LRKLKDYQEK
401: AETRKLGYYD AFKHQEEKAD FDANVSRLVL AGIWDEIIEM LRRYELPDEF ENRKELIELA TIYRRIVEPL DIANYYRHLK NEDTGTYVTR GRPKRYRYTQ
501: RWLEHAENKP SGSRSESCFW AELEELCIQT SGNGSLQDTK QKIQQLQKNV IEWIHEGSLG KDVLLEDSTF VKWWKTLPFE YKSDPESSRI ANLIHG

Best Arabidopsis Sequence Match ( AT3G48090.1 )
(BLAST)

001: MAFEALTGIN GDLITRSWSA SKQAYLTERY HKEEAGAVVI FAFQPSFSEK DFFDPDNKSS FGEIKLNRVQ FPCMRKIGKG DVATVNEAFL KNLEAIIDPR
101: TSFQASVEMA VRSRKQIVFT GHSSGGATAI LATVWYLEKY FIRNPNVYLE PRCVTFGAPL VGDSIFSHAL GREKWSRFFV NFVSRFDIVP RIMLARKASV
201: EETLPHVLAQ LDPRKSSVQE SEQRITEFYT RVMRDTSTVA NQAVCELTGS AEAFLETLSS FLELSPYRPA GTFVFSTEKR LVAVNNSDAI LQMLFYTSQA
301: SDEQEWSLIP FRSIRDHHSY EELVQSMGKK LFNHLDGENS IESTLNDLGV STRGRQYVQA ALEEEKKRVE NQKKIIQVIE QERFLKKLAW IEDEYKPKCQ
401: AHKNGYYDSF KVSNEENDFK ANVKRAELAG VFDEVLGLMK KCQLPDEFEG DIDWIKLATR YRRLVEPLDI ANYHRHLKNE DTGPYMKRGR PTRYIYAQRG
501: YEHYILKPNG MIAEDVFWNK VNGLNLGLQL EEIQETLKNS GSECGSCFWA EVEELKGKPY EEVEVRVKTL EGMLGEWITD GEVDDKEIFL EGSTFRKWWI
601: TLPKNHKSHS PLRDYMMDEI TDT

Arabidopsis Description

EDS1Protein EDS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU72]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.