CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH40959
KRH53943
KRH54464
KRH54465
KRH54468
KRH59603
KRH63455
KRH63997

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48090.1	KRH54464	AT3G48090.1	11574472
AT3G48090.1	KRH54465	AT3G48090.1	11574472
AT3G48090.1	KRH54468	AT3G48090.1	11574472
AT3G48090.1	KRH63455	AT3G48090.1	11574472
AT3G48090.1	KRH40959	AT3G52430.1	11574472
AT3G48090.1	KRH53943	AT3G52430.1	11574472
AT3G48090.1	KRH59603	AT3G52430.1	11574472
AT3G48090.1	KRH63997	AT3G52430.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54465	Soybean	cytosol	54.03	54.47
PGSC0003DMT400083030	Potato	cytosol	47.58	50.43
Solyc06g071280.2.1	Tomato	cytosol	45.65	47.01
VIT_17s0000g07560.t01	Wine grape	cytosol	44.03	45.81
KRH63455	Soybean	cytosol	45.0	45.59
VIT_17s0000g07370.t01	Wine grape	cytosol	42.9	44.33
KRH54468	Soybean	cytosol	44.03	44.25
VIT_17s0000g07420.t01	Wine grape	cytosol	42.26	41.13
Bra033774.1-P	Field mustard	cytosol	36.77	38.51
CDX83034	Canola	cytosol, extracellular, plastid	32.42	38.21
CDX68479	Canola	cytosol, extracellular, plastid	31.94	37.64
Bra033775.1-P	Field mustard	cytosol	36.13	37.33
CDY44979	Canola	cytosol	35.48	36.67
AT3G48090.1	Thale cress	cytosol	36.77	36.6
GSMUA_Achr8P25290_001	Banana	plastid	37.9	36.55
Bra018085.1-P	Field mustard	cytosol	35.0	36.17
CDX83035	Canola	cytosol	33.71	36.03
TraesCS5A01G202200.2	Wheat	cytosol, nucleus, peroxisome, plastid	35.97	35.74
TraesCS5D01G208600.1	Wheat	plastid	35.81	35.63
KXG35573	Sorghum	cytosol, nucleus, peroxisome	35.16	35.62
CDY68128	Canola	cytosol	34.35	35.5
TraesCS5B01G200800.2	Wheat	cytosol, nucleus, peroxisome, plastid	33.55	35.49
AT3G48080.1	Thale cress	cytosol	35.65	35.14
Os09t0392100-01	Rice	cytosol, nucleus, peroxisome, plastid	34.84	34.78
Zm00001d005708_P001	Maize	cytosol, nucleus, peroxisome, plastid	34.68	34.73
HORVU5Hr1G060060.2	Barley	plastid	35.81	33.53
CDX68481	Canola	cytosol	26.77	32.87
VIT_17s0000g07400.t01	Wine grape	plastid	30.65	28.36
KRH53943	Soybean	cytosol, nucleus, peroxisome	21.77	21.33
KRH40959	Soybean	cytosol	21.77	21.33
KRH63997	Soybean	cytosol, nucleus, peroxisome	21.45	21.01
KRG93398	Soybean	cytosol	5.65	20.35
KRH59603	Soybean	plastid	17.1	20.27
KRH18587	Soybean	endoplasmic reticulum, nucleus	18.87	20.1
KRH18578	Soybean	cytosol	11.45	18.98
KRG93399	Soybean	plastid	17.58	18.57
KRH18585	Soybean	mitochondrion	15.32	17.86

Protein Annotations

EntrezGene:100819703	MapMan:26.8.2.4.1	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	EMBL:ACUP02003525	ncoils:Coil
InterPro:Fungal_lipase-like	EnsemblPlantsGene:GLYMA_06G187200	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	UniProt:I1KCL6	InterPro:IPR029058	EnsemblPlants:KRH54464	ProteinID:KRH54464
ProteinID:KRH54464.1	PFAM:PF01764	PANTHER:PTHR21493	PANTHER:PTHR21493:SF94	SUPFAM:SSF53474	UniParc:UPI0002339447

Description

hypothetical protein

Coordinates

chr6:+:16286265..16289966

Molecular Weight (calculated)

70920.0 Da

IEP (calculated)

8.315

GRAVY (calculated)

-0.568

Length

620 amino acids

Sequence
(BLAST)

001: MTQVMRGEVI EKAYAGSWKA HKSPDKPYLI EKINRNDPQE VIFCFPGSGA VRDWYSQKNF GETKIDLGLF PSLRSIGIDE QALVNEAFQK KFQEILSAKP
101: SLADEVEKAM SKKKQIVFAG HSSGGAVAIL ATLWALENYQ PPKSHGGIPP LCVTFGSPLV GNHIFSHATR RENWSHYFFH YVMRYDIVPR ILLAPLSSLD
201: PKFEPISQSF NPKSKSFMSD SVGRASAETT SEFYFAIISN AATVTSHAAS KLMGTTDTTL ETWSNFITLS PYRPFGTYYF CTGNGKSGKK IVITNSNAVL
301: QVLFFSAQLS TEAEAAQVPY RSLRDHTIYG TELQQMGPQN VVHLDQHQLQ NLPLSEDGAG GSNATINTAL NDLGLIPRAR LCLRAAAEWE ARRTDNENKI
401: KEKKDFVAKK LDVLREYRKM YKDKRVGFYD GFREHKQGED DFKANVTRLE LAGVWDEMME KVRSYELPDE FEGNKDYIDL GTELRKLMEP LDIANYYRHG
501: RNYEDSSSSY MIKGRPKRYR YPQRWLEHAE RKSHESLSAS CFWAEVEELH YKTSRSSNIV SLDQQFKERI EKLEIQIKAW SDRKELDEDV FLEGSTLVKW
601: WKALPQQHKQ HSCIKTLIRE

Best Arabidopsis Sequence Match ( AT3G48090.1 )
(BLAST)

001: MAFEALTGIN GDLITRSWSA SKQAYLTERY HKEEAGAVVI FAFQPSFSEK DFFDPDNKSS FGEIKLNRVQ FPCMRKIGKG DVATVNEAFL KNLEAIIDPR
101: TSFQASVEMA VRSRKQIVFT GHSSGGATAI LATVWYLEKY FIRNPNVYLE PRCVTFGAPL VGDSIFSHAL GREKWSRFFV NFVSRFDIVP RIMLARKASV
201: EETLPHVLAQ LDPRKSSVQE SEQRITEFYT RVMRDTSTVA NQAVCELTGS AEAFLETLSS FLELSPYRPA GTFVFSTEKR LVAVNNSDAI LQMLFYTSQA
301: SDEQEWSLIP FRSIRDHHSY EELVQSMGKK LFNHLDGENS IESTLNDLGV STRGRQYVQA ALEEEKKRVE NQKKIIQVIE QERFLKKLAW IEDEYKPKCQ
401: AHKNGYYDSF KVSNEENDFK ANVKRAELAG VFDEVLGLMK KCQLPDEFEG DIDWIKLATR YRRLVEPLDI ANYHRHLKNE DTGPYMKRGR PTRYIYAQRG
501: YEHYILKPNG MIAEDVFWNK VNGLNLGLQL EEIQETLKNS GSECGSCFWA EVEELKGKPY EEVEVRVKTL EGMLGEWITD GEVDDKEIFL EGSTFRKWWI
601: TLPKNHKSHS PLRDYMMDEI TDT

Arabidopsis Description

EDS1Protein EDS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU72]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.