CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

plastid 4
extracellular 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18578	Soybean	cytosol	48.28	75.13
KRG93398	Soybean	cytosol	15.64	52.91
KRG93399	Soybean	plastid	52.41	51.96
PGSC0003DMT400089805	Potato	cytosol	12.54	51.05
KRH18585	Soybean	mitochondrion	43.64	47.74
VIT_14s0066g01820.t01	Wine grape	cytosol	35.05	40.8
PGSC0003DMT400017886	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	39.52	39.93
VIT_05s0077g01750.t01	Wine grape	extracellular, plasma membrane	38.32	39.68
VIT_05s0077g01720.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	38.49	39.65
Solyc02g067660.2.1	Tomato	plastid	38.32	39.33
CDY09901	Canola	cytosol, endoplasmic reticulum, nucleus	24.23	36.72
CDY09899	Canola	extracellular, vacuole	34.02	36.53
PGSC0003DMT400054651	Potato	extracellular, nucleus, peroxisome	36.08	36.46
VIT_14s0066g01810.t01	Wine grape	cytosol	37.63	36.38
CDX70581	Canola	cytosol	32.82	36.31
Solyc02g069400.2.1	Tomato	extracellular, nucleus, peroxisome	36.08	36.14
CDX78600	Canola	extracellular	33.16	36.14
CDX70584	Canola	cytosol	32.13	35.55
CDY69990	Canola	endoplasmic reticulum	34.54	35.45
CDX70582	Canola	cytosol	31.27	35.07
CDX78601	Canola	nucleus	30.24	35.06
Bra006274.1-P	Field mustard	nucleus	30.07	34.93
Bra008729.1-P	Field mustard	cytosol	31.27	34.6
AT5G14930.2	Thale cress	cytosol, nucleus, plastid	31.79	34.45
VIT_14s0066g01840.t01	Wine grape	mitochondrion	17.35	30.42
Bra008731.1-P	Field mustard	extracellular, plasma membrane, vacuole	34.54	28.23
KRH53943	Soybean	cytosol, nucleus, peroxisome	22.85	21.01
KRH63997	Soybean	cytosol, nucleus, peroxisome	22.68	20.85
KRH40959	Soybean	cytosol	21.82	20.06
VIT_05s0077g01730.t01	Wine grape	cytosol	35.74	19.94
KRH63455	Soybean	cytosol	19.93	18.95
VIT_14s0066g01830.t01	Wine grape	mitochondrion	37.63	18.94
KRH54464	Soybean	cytosol, endoplasmic reticulum	20.1	18.87
KRH54468	Soybean	cytosol	19.07	17.99
KRH59603	Soybean	plastid	15.64	17.4
KRH54465	Soybean	cytosol	18.04	17.07

Protein Annotations

EntrezGene:100809557	MapMan:26.8.2.4.3	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	EMBL:ACUP02008097	ncoils:Coil
InterPro:Fungal_lipase-like	EnsemblPlantsGene:GLYMA_13G069800	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	UniProt:I1LWE5	InterPro:IPR029058	EnsemblPlants:KRH18587	ProteinID:KRH18587
ProteinID:KRH18587.1	PFAM:PF01764	PANTHER:PTHR21493	PANTHER:PTHR21493:SF238	SUPFAM:SSF53474	UniParc:UPI000233AC77
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:16985150..16988513

Molecular Weight (calculated)

66117.8 Da

IEP (calculated)

7.870

GRAVY (calculated)

-0.379

Length

582 amino acids

Sequence
(BLAST)

001: MTLPQSFGCG LVQAPLVTSS GLLTKVWSVI SSRDEDIVSY SGNNGLSLKV SEDSGLTVVA FEVNPDFDLQ STVVSFSDPK ENNLNRFEFL CTKKHPDFSV
101: NKSVVDLFSK NLPRLDELKS KIDSSPRLIV TGRGLGGPIA SLFTLSLLGN KNSSEKKKPP LCITFGSPLV GNKKFQEAIS RSSTWSSCFL HVVSIKDPFL
201: KRLNPDIKDY MPFGTFLFCS DISSTCFENP KSVLELLVIS IKDQNQAFPS IDYGNIVGNL YIKAICKDFT PRGQDFTDSN SLRASIRLQL WAALGLTPDM
301: QQQHLNIDIN ALVTKLEKLE KEVIFQKGNK FDPSKKLNVM KIEMAKLEWY KKYSKNNKIG YYDSFKRGIS TSDLDVVQCQ KTLRNYWIDM VAEAELKPQT
401: EGAAFRTRWL FGGTNYRRMF EPLDIAEYYA NGGKDYEAKG RSRHYIVLQE WLEEDKKEKS NSNSTNKKDV ESILTFDSCF WAHVEEAILS CKVLKDEQSS
501: VTEKEEETGK LLEFEKYVYG LLTKYEVSSE IFLRQSSYMI WWNQYKAIKG TSYNSALADF MSNPDHYNVL YIKGTYNFPP QA

Best Arabidopsis Sequence Match ( AT5G14930.2 )
(BLAST)

001: MESSSSLKGS ALGKLVVTSG LLHSSWSKIL EIHNPPYSNH DPGLQVSKKK KDSGLEFQIH REEKFTLVVF SAPPICRSSS SDSTLLHVKD KENPFPFLCS
101: ENNPSFSLHT PAFNLFTSAS TSLTYLKSEL LQTLKSEKPV IITGAALGGS VASLYTLWLL ETIEPTLKRP LCITFGSPLI GDASLQQILE NSVRNSCFLH
201: VVSAQTRIKM DFFKPFGTFL ICFDSGCVCI EDHVAVTELL NGVHDSGLVD YSQVLNRLDQ SMLSLADSRL IPEDVIKGIE KRAEMKNLRF DMMFKKLNDM
301: KISMAYIEWY KKKCKEVKIG YYDRFKTQLA FPSKEFDINI KNHHKSELNR FWKSVVEEVE RRPQSDASIL KRRFLFSGNN YRRMIEPLDI AEYYLEGRKE
401: YRTTGRSHHY VMLEKWFGME SILIEKERCK KRDLSDLLTF DSCFWAEVED SLIVINQLNT TVGMRDDVRE VLTRKLVEFE GYVWEIITKR EVSPEIFLEE
501: SSFMKWWKEY KKIKGFNSSY LTEFMNTRKY ESYGKSQ

Arabidopsis Description

SAG101Senescence-associated carboxylesterase 101 [Source:UniProtKB/Swiss-Prot;Acc:Q4F883]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.