CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH40959
KRH53943
KRH54464
KRH54465
KRH54468
KRH59603
KRH63455
KRH63997

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48090.1	KRH54464	AT3G48090.1	11574472
AT3G48090.1	KRH54465	AT3G48090.1	11574472
AT3G48090.1	KRH54468	AT3G48090.1	11574472
AT3G48090.1	KRH63455	AT3G48090.1	11574472
AT3G48090.1	KRH40959	AT3G52430.1	11574472
AT3G48090.1	KRH53943	AT3G52430.1	11574472
AT3G48090.1	KRH59603	AT3G52430.1	11574472
AT3G48090.1	KRH63997	AT3G52430.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54468	Soybean	cytosol	74.67	74.07
KRH54465	Soybean	cytosol	58.01	57.72
PGSC0003DMT400083030	Potato	cytosol	48.2	50.43
VIT_17s0000g07560.t01	Wine grape	cytosol	48.37	49.66
Solyc06g071280.2.1	Tomato	cytosol	47.06	47.84
KRH54464	Soybean	cytosol, endoplasmic reticulum	45.59	45.0
VIT_17s0000g07420.t01	Wine grape	cytosol	46.57	44.74
VIT_17s0000g07370.t01	Wine grape	cytosol	43.3	44.17
CDX83034	Canola	cytosol, extracellular, plastid	34.97	40.68
Bra033774.1-P	Field mustard	cytosol	38.89	40.2
CDX68479	Canola	cytosol, extracellular, plastid	34.48	40.11
Bra033775.1-P	Field mustard	cytosol	38.4	39.17
AT3G48080.1	Thale cress	cytosol	39.87	38.79
GSMUA_Achr8P25290_001	Banana	plastid	40.36	38.41
AT3G48090.1	Thale cress	cytosol	38.89	38.2
CDY44979	Canola	cytosol	37.42	38.17
KXG35573	Sorghum	cytosol, nucleus, peroxisome	38.07	38.07
CDX83035	Canola	cytosol	35.78	37.76
TraesCS5A01G202200.2	Wheat	cytosol, nucleus, peroxisome, plastid	38.4	37.66
Zm00001d005708_P001	Maize	cytosol, nucleus, peroxisome, plastid	38.07	37.64
Os09t0392100-01	Rice	cytosol, nucleus, peroxisome, plastid	38.07	37.52
CDY68128	Canola	cytosol	36.6	37.33
TraesCS5D01G208600.1	Wheat	plastid	37.91	37.24
Bra018085.1-P	Field mustard	cytosol	36.44	37.17
TraesCS5B01G200800.2	Wheat	cytosol, nucleus, peroxisome, plastid	35.29	36.86
CDX68481	Canola	cytosol	30.07	36.44
HORVU5Hr1G060060.2	Barley	plastid	38.4	35.5
VIT_17s0000g07400.t01	Wine grape	plastid	32.52	29.7
KRH40959	Soybean	cytosol	24.84	24.01
KRH59603	Soybean	plastid	19.77	23.14
KRH63997	Soybean	cytosol, nucleus, peroxisome	22.39	21.64
KRH53943	Soybean	cytosol, nucleus, peroxisome	22.22	21.48
KRG93398	Soybean	cytosol	5.72	20.35
KRH18587	Soybean	endoplasmic reticulum, nucleus	18.95	19.93
KRH18578	Soybean	cytosol	11.76	19.25
KRG93399	Soybean	plastid	18.14	18.91
KRH18585	Soybean	mitochondrion	16.01	18.42

Protein Annotations

MapMan:26.8.2.4.1	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	EMBL:ACUP02002694	ncoils:Coil	InterPro:Fungal_lipase-like
EnsemblPlantsGene:GLYMA_04G177700	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	UniProt:I1JX17	InterPro:IPR029058	EnsemblPlants:KRH63455	ProteinID:KRH63455	ProteinID:KRH63455.1
PFAM:PF01764	PANTHER:PTHR21493	PANTHER:PTHR21493:SF94	SUPFAM:SSF53474	UniParc:UPI000233A688	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:44189964..44193177

Molecular Weight (calculated)

69560.0 Da

IEP (calculated)

8.329

GRAVY (calculated)

-0.379

Length

612 amino acids

Sequence
(BLAST)

001: MAGGLLGDNL GLKEDVIKRV CGLASKAHNH KSTDKLYFYD KVRTSSGTYH VFSFSGSWDP AEWFFSKPFG GSKIDPTQFP SLRSIGNDEP ALVNEGFAKR
101: FDRVLKTSFK AEVNKAIGDG KQVVFTGHSS GAAIAILATF WALEEYLNPT KIQKPTPPFC VTFGSPLIGN HIFSHASRRE NWSRYFIHFV LRYDIVPRIL
201: LSRLASIKQT FGSVLQFLNP NSKTSTQDPT RASLISEFYK TVMTNAASVT SHAACILMGS TSLLLGTVAN FVELSPYRPF GTFIFCNGNG QLIVVKNSDA
301: VLQLLFHTAQ MSDLAELPEV ANVSILQHQA YEAELDDSLG MQNVVYLEQL EQLPLSADGS NSDVATISAA LDGLGLSTRA RLCLRAAGEL EKQKLKNEEK
401: IKKEIQEKAV PSMTKLQNYK TTCEMHKGKG YYDAFKVQNE ENDFQANVKR LVLAGVWDEV IEMLKRYELP DEFEGNSKWI EHGTEFRRLV EPLDIANYHR
501: HLKNEDTGPY MIRARPKRYR YTQRWLEHAK RVPKPAPITE STFWAEVEEL YSWINSKRHL DDEVKQRVVQ LQKDLKKWTD DEKVLTKDTF LKDPNFIRWW
601: DILPQELRVT SF

Best Arabidopsis Sequence Match ( AT3G48080.1 )
(BLAST)

001: MAFEALTGVN GDLVTISWMA SKGANQTEHY LKEEVGGTVF FAFRASFSSE DLFATENTSP FGEIKMKRNQ FPCMRSIGND VDTTVNEAFL KSLEVLIGPR
101: TSFHASVQSA VDRKQQVVFT GHSFGGATAI LATVWYLETY FIRDAYAAPE PRCVTFGAPL VGDYIFKHAL GRENWSRFFV NFVTRFDIVP RIMLARKTTI
201: EQTLSYVLGK LDSTRAPIHE SDQVITEFYT RVMRDTYTVA SKAVCQLIGN GEAFLETLSS FYELSPYRPV GTFVFSTQKR LVVVNNSDAI LQMLFYTCQS
301: NDEQELSVIP FLSIRDHHGY EELVQSIGIK LLNHLDLHNP LLDGENSIGS ALDDLGMSTR ARQCIHAALE AEKQRVENQK KIETKRDQIV ERLTWIVEVY
401: KPKCQAHKNG YYDSFKDSNE ENDFKANVKR VELAGIFDEV LGLVKKGQLP DGFEGSRGWI NLATQYRRLI EPLDISNYHG QLKNEDTGPY MLHGRPSRYK
501: YAQRGYEHDI LKPTGMIAKD VFWSKVNGLN LGLQQDIQEI LKNSGSECGS CFWAEVEELK GKPYEEVQVR FKTLEGLLEG WIKDGEVDEK EIFLEGSTFR
601: KWWNTLPDSH KIHAPLYPRE RMMDETRAT

Arabidopsis Description

EDS1BProtein EDS1B [Source:UniProtKB/Swiss-Prot;Acc:Q9SU71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.