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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68479
CDX68481
CDX73637
CDX78091
CDX83034
CDX83035
CDX90603
CDY23217
CDY29081
CDY44979
CDY67344
CDY68128
CDY68190
CDY69054

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G48090.1 CDX68479 AT3G48090.1 11574472
AT3G48090.1 CDX68481 AT3G48090.1 11574472
AT3G48090.1 CDX83034 AT3G48090.1 11574472
AT3G48090.1 CDX83035 AT3G48090.1 11574472
AT3G48090.1 CDY44979 AT3G48090.1 11574472
AT3G48090.1 CDY68128 AT3G48090.1 11574472
AT3G48090.1 CDX73637 AT3G52430.1 11574472
AT3G48090.1 CDX78091 AT3G52430.1 11574472
AT3G48090.1 CDX90603 AT3G52430.1 11574472
AT3G48090.1 CDY23217 AT3G52430.1 11574472
AT3G48090.1 CDY29081 AT3G52430.1 11574472
AT3G48090.1 CDY67344 AT3G52430.1 11574472
AT3G48090.1 CDY68190 AT3G52430.1 11574472
AT3G48090.1 CDY69054 AT3G52430.1 11574472
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX83035 Canola cytosol 80.99 70.52
CDY68128 Canola cytosol 59.41 50.0
CDX83034 Canola cytosol, extracellular, plastid 51.09 49.05
CDY44979 Canola cytosol 57.43 48.33
CDX68479 Canola cytosol, extracellular, plastid 50.1 48.1
AT3G48090.1 Thale cress cytosol 53.27 43.18
AT3G48080.1 Thale cress cytosol 48.91 39.27
KRH63455 Soybean cytosol 36.44 30.07
PGSC0003DMT400083030 Potato cytosol 34.26 29.57
KRH54468 Soybean cytosol 34.85 28.53
Solyc06g071280.2.1 Tomato cytosol 33.47 28.07
KRH54465 Soybean cytosol 33.86 27.8
VIT_17s0000g07560.t01 Wine grape cytosol 32.48 27.52
KRH54464 Soybean cytosol, endoplasmic reticulum 32.87 26.77
Os09t0392100-01 Rice cytosol, nucleus, peroxisome, plastid 31.29 25.44
VIT_17s0000g07370.t01 Wine grape cytosol 29.9 25.17
TraesCS5B01G200800.2 Wheat cytosol, nucleus, peroxisome, plastid 28.91 24.91
KXG35573 Sorghum cytosol, nucleus, peroxisome 29.5 24.35
TraesCS5D01G208600.1 Wheat plastid 29.9 24.24
TraesCS5A01G202200.2 Wheat cytosol, nucleus, peroxisome, plastid 29.9 24.2
VIT_17s0000g07420.t01 Wine grape cytosol 30.5 24.18
Zm00001d005708_P001 Maize cytosol, nucleus, peroxisome, plastid 29.31 23.91
GSMUA_Achr8P25290_001 Banana plastid 30.3 23.79
HORVU5Hr1G060060.2 Barley plastid 30.5 23.26
VIT_17s0000g07400.t01 Wine grape plastid 24.16 18.21
CDY67344 Canola plastid 15.45 18.14
CDY23217 Canola plastid 14.26 16.74
CDY69054 Canola cytosol 14.65 16.74
CDX78091 Canola cytosol, nucleus, peroxisome 17.03 15.72
CDX73637 Canola cytosol, nucleus, peroxisome 16.83 15.51
CDY68190 Canola cytosol 9.7 15.46
CDY29081 Canola cytosol, endoplasmic reticulum, peroxisome 16.63 15.3
CDX70584 Canola cytosol 15.45 14.83
CDY29080 Canola extracellular 1.98 14.29
CDX78601 Canola nucleus 13.27 13.35
CDX70581 Canola cytosol 13.86 13.31
CDX78600 Canola extracellular 13.86 13.11
CDX70582 Canola cytosol 13.47 13.1
CDX90603 Canola plasma membrane 16.04 12.86
CDY09899 Canola extracellular, vacuole 13.27 12.36
CDY00844 Canola extracellular 1.58 12.31
CDY09901 Canola cytosol, endoplasmic reticulum, nucleus 8.91 11.72
CDY69990 Canola endoplasmic reticulum 13.07 11.64
Protein Annotations
EnsemblPlants:CDX68481EnsemblPlantsGene:GSBRNA2T00125971001Gene3D:3.40.50.1820GO:A0A078BUL9GO:GO:0006629GO:GO:0008150
GO:GO:0008152InterPro:AB_hydrolaseInterPro:Fungal_lipase-likeInterPro:IPR029058ncoils:CoilPANTHER:PTHR21493
PANTHER:PTHR21493:SF94PFAM:PF01764ProteinID:CDX68481ProteinID:CDX68481.1SEG:segSUPFAM:SSF53474
UniParc:UPI0004EE6B0CMapMan:26.8.2.4.1::::
Description
BnaC01g25590D
Coordinates
chrLK031788:+:2484886..2486690
Molecular Weight (calculated)
57118.4 Da
IEP (calculated)
6.370
GRAVY (calculated)
-0.534
Length
505 amino acids
Sequence
(BLAST)
001: MAQEPLAVAG ISNDLVTRSW MASKIAYNTE HFCEEEEGEL VYFSFKPSFS EKDWFAPENG SSFGETKMNR DQFPCMRSFS NDVDATVNEA FLKNLDNLIS
101: QRTSFRDDVV SSQKCQRIVF TGHSSGGATA ILATVWYLET YFTKKQIGGF PFPEPRCVTF GGFDIVPRIM LAPKASTKQT LPYPLYKLDH TASRIQENDQ
201: GTAGFFAAVM KDVEIASRQA GWELIGDGGN AFLETFSSFL ELSPYRPAGT FVFSTGTRLV QVRNSDAILQ LLFYASQSSN EQELSLRPYE SIQDHRSYQE
301: MVDSMGTKEV NQLELHHLAL DGGESALSDL GLSTNDRKCL LAAYEAEKKR VDNQKKMDKE KKPKKIEEKD WIENVYKPRC LALAKGYYDS FKESPEDDDF
401: TANVTRAELA GSFDKVFGLL KKGQLPNGFE GRSEWIELQI RYVKLVEPLD IANYHRHLKN EDTGPYMGKG RPNRYKHAQR LFEHKLLKAG RPAKEIKTSS
501: LGSCF
Best Arabidopsis Sequence Match ( AT3G48080.1 )
(BLAST)
001: MAFEALTGVN GDLVTISWMA SKGANQTEHY LKEEVGGTVF FAFRASFSSE DLFATENTSP FGEIKMKRNQ FPCMRSIGND VDTTVNEAFL KSLEVLIGPR
101: TSFHASVQSA VDRKQQVVFT GHSFGGATAI LATVWYLETY FIRDAYAAPE PRCVTFGAPL VGDYIFKHAL GRENWSRFFV NFVTRFDIVP RIMLARKTTI
201: EQTLSYVLGK LDSTRAPIHE SDQVITEFYT RVMRDTYTVA SKAVCQLIGN GEAFLETLSS FYELSPYRPV GTFVFSTQKR LVVVNNSDAI LQMLFYTCQS
301: NDEQELSVIP FLSIRDHHGY EELVQSIGIK LLNHLDLHNP LLDGENSIGS ALDDLGMSTR ARQCIHAALE AEKQRVENQK KIETKRDQIV ERLTWIVEVY
401: KPKCQAHKNG YYDSFKDSNE ENDFKANVKR VELAGIFDEV LGLVKKGQLP DGFEGSRGWI NLATQYRRLI EPLDISNYHG QLKNEDTGPY MLHGRPSRYK
501: YAQRGYEHDI LKPTGMIAKD VFWSKVNGLN LGLQQDIQEI LKNSGSECGS CFWAEVEELK GKPYEEVQVR FKTLEGLLEG WIKDGEVDEK EIFLEGSTFR
601: KWWNTLPDSH KIHAPLYPRE RMMDETRAT
Arabidopsis Description
EDS1BProtein EDS1B [Source:UniProtKB/Swiss-Prot;Acc:Q9SU71]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.