Factsheet for VIT_17s0000g07400.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
plasma membrane 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0031g02390.t01
VIT_17s0000g07370.t01
VIT_17s0000g07400.t01
VIT_17s0000g07420.t01
VIT_17s0000g07560.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48090.1	VIT_17s0000g07370.t01	AT3G48090.1	11574472
AT3G48090.1	VIT_17s0000g07400.t01	AT3G48090.1	11574472
AT3G48090.1	VIT_17s0000g07420.t01	AT3G48090.1	11574472
AT3G48090.1	VIT_17s0000g07560.t01	AT3G48090.1	11574472
AT3G48090.1	VIT_07s0031g02390.t01	AT3G52430.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g07370.t01	Wine grape	cytosol	50.15	56.0
VIT_17s0000g07420.t01	Wine grape	cytosol	49.1	51.65
VIT_17s0000g07560.t01	Wine grape	cytosol	42.54	47.82
PGSC0003DMT400083030	Potato	cytosol	29.7	34.02
KRH54465	Soybean	cytosol	30.6	33.33
KRH54468	Soybean	cytosol	30.3	32.9
Solyc06g071280.2.1	Tomato	cytosol	29.25	32.56
KRH63455	Soybean	cytosol	29.7	32.52
KRH54464	Soybean	cytosol, endoplasmic reticulum	28.36	30.65
GSMUA_Achr8P25290_001	Banana	plastid	25.82	26.91
Os09t0392100-01	Rice	cytosol, nucleus, peroxisome, plastid	24.33	26.25
KXG35573	Sorghum	cytosol, nucleus, peroxisome	23.88	26.14
TraesCS5A01G202200.2	Wheat	cytosol, nucleus, peroxisome, plastid	24.18	25.96
Zm00001d005708_P001	Maize	cytosol, nucleus, peroxisome, plastid	23.88	25.85
TraesCS5D01G208600.1	Wheat	plastid	24.03	25.84
Bra033774.1-P	Field mustard	cytosol	22.69	25.68
CDY68128	Canola	cytosol	22.84	25.5
Bra018085.1-P	Field mustard	cytosol	22.69	25.33
CDX83034	Canola	cytosol, extracellular, plastid	19.85	25.29
Bra033775.1-P	Field mustard	cytosol	22.54	25.17
CDX68479	Canola	cytosol, extracellular, plastid	19.4	24.71
CDY44979	Canola	cytosol	22.09	24.67
TraesCS5B01G200800.2	Wheat	cytosol, nucleus, peroxisome, plastid	21.49	24.57
AT3G48080.1	Thale cress	cytosol	22.99	24.48
HORVU5Hr1G060060.2	Barley	plastid	24.18	24.47
CDX68481	Canola	cytosol	18.21	24.16
CDX83035	Canola	cytosol	20.15	23.28
AT3G48090.1	Thale cress	cytosol	21.49	23.11
VIT_14s0066g01840.t01	Wine grape	mitochondrion	10.45	21.08
VIT_07s0031g02390.t01	Wine grape	cytosol	14.63	15.83
VIT_05s0077g01720.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	12.54	14.87
VIT_05s0077g01750.t01	Wine grape	extracellular, plasma membrane	11.94	14.23
VIT_14s0066g01820.t01	Wine grape	cytosol	10.45	14.0
VIT_14s0066g01810.t01	Wine grape	cytosol	12.54	13.95
VIT_05s0077g01730.t01	Wine grape	cytosol	14.18	9.11
VIT_14s0066g01830.t01	Wine grape	mitochondrion	12.24	7.09

Protein Annotations

MapMan:26.8.2.4.1	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	ProteinID:CCB43027	ProteinID:CCB43027.1	ncoils:Coil
UniProt:F6GSY6	EMBL:FN594950	InterPro:Fungal_lipase-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:IPR029058	PFAM:PF01764	PANTHER:PTHR21493
PANTHER:PTHR21493:SF94	SUPFAM:SSF53474	TIGR:TC69514	UniParc:UPI00021091A9	ArrayExpress:VIT_17s0000g07400	EnsemblPlantsGene:VIT_17s0000g07400
EnsemblPlants:VIT_17s0000g07400.t01	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:8312937..8334615

Molecular Weight (calculated)

75694.5 Da

IEP (calculated)

8.572

GRAVY (calculated)

-0.456

Length

670 amino acids

Sequence
(BLAST)

001: MGTCNFPSLK SLGDDGVALV NGSFLQRFNA IHSSLAKKST QAMLCLQATG ELEKLKSRNQ DKIINDYKQK IEGELRKLSK YKEKAETCGL GYYDSFKLQE
101: KEDGFQANVS RLVLAGYWDE MMEMLKAYKL PDEFEKSHDC IRLGTDYRRT VEPLDIANFY RHAKDEETGF YVKKGTRPKR YRYIQNWLEH AEKKPSGSRS
201: ESCFWAEVED LRIKTRSNGS SPEIKQKREN LHRENMGETL DRIGLSGEVI NAAASLAMKA HDSTREPFLL KKPRGLSVAV VAFAGSWLPD DWCAETPFGE
301: TTIDAGTFPS LKSLGDDGVA LVNGSFLRRF KAILGQSSLA EKVKKVIGEK KRVVFTGYSS GAPVAILATL CLLEKPEPNQ SPPRCVTFGS PLVGDRIFGH
401: AVRREKWSDH FVHFVMRYDV IPRIMLAPSS TEHKQILDFF NPRSEFFRKP IDSPLGFYSS VMRNASLVAN YDACNLMGCR IPALETLRNF IELSPYRPFG
501: TYIFCTGNGK LVVVRNSNAV LQMLFYCAQW TQEEAAGVAQ RSLSEHLAYK DEIQESLGMQ NVVYLDRLEE IPVSSDGSPA TVNTALNDLG LSPQGRLCLQ
601: AAGELEKRKS RNQDKIINDY KQKIEGELRE LRKYKEKAET CGLGYYDSFK LNKYEEDFRA NVSRLVLAGF

Best Arabidopsis Sequence Match ( AT3G48090.1 )
(BLAST)

001: MAFEALTGIN GDLITRSWSA SKQAYLTERY HKEEAGAVVI FAFQPSFSEK DFFDPDNKSS FGEIKLNRVQ FPCMRKIGKG DVATVNEAFL KNLEAIIDPR
101: TSFQASVEMA VRSRKQIVFT GHSSGGATAI LATVWYLEKY FIRNPNVYLE PRCVTFGAPL VGDSIFSHAL GREKWSRFFV NFVSRFDIVP RIMLARKASV
201: EETLPHVLAQ LDPRKSSVQE SEQRITEFYT RVMRDTSTVA NQAVCELTGS AEAFLETLSS FLELSPYRPA GTFVFSTEKR LVAVNNSDAI LQMLFYTSQA
301: SDEQEWSLIP FRSIRDHHSY EELVQSMGKK LFNHLDGENS IESTLNDLGV STRGRQYVQA ALEEEKKRVE NQKKIIQVIE QERFLKKLAW IEDEYKPKCQ
401: AHKNGYYDSF KVSNEENDFK ANVKRAELAG VFDEVLGLMK KCQLPDEFEG DIDWIKLATR YRRLVEPLDI ANYHRHLKNE DTGPYMKRGR PTRYIYAQRG
501: YEHYILKPNG MIAEDVFWNK VNGLNLGLQL EEIQETLKNS GSECGSCFWA EVEELKGKPY EEVEVRVKTL EGMLGEWITD GEVDDKEIFL EGSTFRKWWI
601: TLPKNHKSHS PLRDYMMDEI TDT

Arabidopsis Description

EDS1Protein EDS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU72]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.