Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68479
CDX68481
CDX73637
CDX78091
CDX83034
CDX83035
CDX90603
CDY23217
CDY29081
CDY44979
CDY67344
CDY68128
CDY68190
CDY69054

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G48090.1 CDX68479 AT3G48090.1 11574472
AT3G48090.1 CDX68481 AT3G48090.1 11574472
AT3G48090.1 CDX83034 AT3G48090.1 11574472
AT3G48090.1 CDX83035 AT3G48090.1 11574472
AT3G48090.1 CDY44979 AT3G48090.1 11574472
AT3G48090.1 CDY68128 AT3G48090.1 11574472
AT3G48090.1 CDX73637 AT3G52430.1 11574472
AT3G48090.1 CDX78091 AT3G52430.1 11574472
AT3G48090.1 CDX90603 AT3G52430.1 11574472
AT3G48090.1 CDY23217 AT3G52430.1 11574472
AT3G48090.1 CDY29081 AT3G52430.1 11574472
AT3G48090.1 CDY67344 AT3G52430.1 11574472
AT3G48090.1 CDY68190 AT3G52430.1 11574472
AT3G48090.1 CDY69054 AT3G52430.1 11574472
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra033775.1-P Field mustard cytosol 98.1 94.83
CDX68481 Canola cytosol 70.52 80.99
CDX83034 Canola cytosol, extracellular, plastid 56.21 61.98
CDX68479 Canola cytosol, extracellular, plastid 54.83 60.46
CDY68128 Canola cytosol 61.9 59.83
CDY44979 Canola cytosol 60.69 58.67
AT3G48090.1 Thale cress cytosol 53.97 50.24
AT3G48080.1 Thale cress cytosol 54.31 50.08
KRH63455 Soybean cytosol 37.76 35.78
PGSC0003DMT400083030 Potato cytosol 36.03 35.73
Solyc06g071280.2.1 Tomato cytosol 36.03 34.72
KRH54468 Soybean cytosol 36.55 34.36
KRH54465 Soybean cytosol 36.38 34.31
KRH54464 Soybean cytosol, endoplasmic reticulum 36.03 33.71
VIT_17s0000g07560.t01 Wine grape cytosol 34.14 33.22
VIT_17s0000g07370.t01 Wine grape cytosol 33.45 32.33
Os09t0392100-01 Rice cytosol, nucleus, peroxisome, plastid 34.31 32.05
KXG35573 Sorghum cytosol, nucleus, peroxisome 32.07 30.39
VIT_17s0000g07420.t01 Wine grape cytosol 33.28 30.3
TraesCS5B01G200800.2 Wheat cytosol, nucleus, peroxisome, plastid 30.52 30.2
Zm00001d005708_P001 Maize cytosol, nucleus, peroxisome, plastid 32.07 30.05
TraesCS5D01G208600.1 Wheat plastid 31.9 29.7
TraesCS5A01G202200.2 Wheat cytosol, nucleus, peroxisome, plastid 31.9 29.65
GSMUA_Achr8P25290_001 Banana plastid 31.9 28.77
HORVU5Hr1G060060.2 Barley plastid 32.41 28.4
CDY67344 Canola plastid 16.72 22.56
CDY69054 Canola cytosol 16.38 21.49
CDY23217 Canola plastid 15.69 21.16
CDY68190 Canola cytosol 11.55 21.14
CDY29081 Canola cytosol, endoplasmic reticulum, peroxisome 19.31 20.4
VIT_17s0000g07400.t01 Wine grape plastid 23.28 20.15
CDX78091 Canola cytosol, nucleus, peroxisome 18.62 19.74
CDX73637 Canola cytosol, nucleus, peroxisome 18.62 19.71
CDX70584 Canola cytosol 17.41 19.2
CDX70581 Canola cytosol 16.55 18.25
CDX78600 Canola extracellular 16.72 18.16
CDX78601 Canola nucleus 15.52 17.93
CDX70582 Canola cytosol 16.03 17.92
CDY09901 Canola cytosol, endoplasmic reticulum, nucleus 11.55 17.45
CDY09899 Canola extracellular, vacuole 16.03 17.16
CDX90603 Canola plasma membrane 18.45 16.98
CDY69990 Canola endoplasmic reticulum 15.86 16.23
CDY29080 Canola extracellular 1.9 15.71
CDY00844 Canola extracellular 1.72 15.38
Protein Annotations
EnsemblPlants:CDX83035EnsemblPlantsGene:GSBRNA2T00138512001Gene3D:3.40.50.1820GO:A0A078D1P2GO:GO:0006629GO:GO:0008150
GO:GO:0008152InterPro:AB_hydrolaseInterPro:Fungal_lipase-likeInterPro:IPR029058PANTHER:PTHR21493PANTHER:PTHR21493:SF94
PFAM:PF01764ProteinID:CDX83035ProteinID:CDX83035.1SEG:segSUPFAM:SSF53474UniParc:UPI0004EE58D4
MapMan:26.8.2.4.1:::::
Description
BnaA01g20350D
Coordinates
chrLK031831:+:929917..932190
Molecular Weight (calculated)
65740.8 Da
IEP (calculated)
5.488
GRAVY (calculated)
-0.495
Length
580 amino acids
Sequence
(BLAST)
001: MAQEALAVAG ISNDLVTRSW MASKIAYNTE HFCKEEEGEL VYFSFKPSFS EKDWFAPENG SSFGETKMNR EQFPCMRSFS NDVDATVNEA FLKNLDILIS
101: QRTSFRDDVV SSQKCKRIVF TGHSSGGATA ILATVWYLET YLTKKQIGGF PFPEPLCVTF DIVPRIMLAP KASTKQTLPY ALYKLDDTAS RIQENDQGIA
201: GFFAAVMKDV EIASRQAGCE LIGDGGGNAF LETFSSFLEL SPYRPAGTFV FSTGTRLVQV SNSDAIFQLL FYASQSSNEQ ELSLRPYESI QDHRSYQEMV
301: DSMGTKEVND LDMDHLAFDG GESALSDLGL GKKKKKALIP STSDRKCLLA AYEAEKKRVD NQSKMDKERE TKTEEKLDWI ENVYKPRCLA LAKGYYDSFK
401: ESPEDDDFTA NVTRAELAGS FDKVFGLLKK GQLPDGFEGR SEWIELQIRY VKLVEPLDIA NYHRHLKNED TGPYMGKGRP NRYKHAQRLY EHKLLKAGRP
501: AEEIKTSSLG SCFWAEVEEL RGKEYDKVKV SKLEELLQGW IIDKEVDDEH IFLEGSTFRK WWHSLPELHK LCSLLRGRMG
Best Arabidopsis Sequence Match ( AT3G48080.1 )
(BLAST)
001: MAFEALTGVN GDLVTISWMA SKGANQTEHY LKEEVGGTVF FAFRASFSSE DLFATENTSP FGEIKMKRNQ FPCMRSIGND VDTTVNEAFL KSLEVLIGPR
101: TSFHASVQSA VDRKQQVVFT GHSFGGATAI LATVWYLETY FIRDAYAAPE PRCVTFGAPL VGDYIFKHAL GRENWSRFFV NFVTRFDIVP RIMLARKTTI
201: EQTLSYVLGK LDSTRAPIHE SDQVITEFYT RVMRDTYTVA SKAVCQLIGN GEAFLETLSS FYELSPYRPV GTFVFSTQKR LVVVNNSDAI LQMLFYTCQS
301: NDEQELSVIP FLSIRDHHGY EELVQSIGIK LLNHLDLHNP LLDGENSIGS ALDDLGMSTR ARQCIHAALE AEKQRVENQK KIETKRDQIV ERLTWIVEVY
401: KPKCQAHKNG YYDSFKDSNE ENDFKANVKR VELAGIFDEV LGLVKKGQLP DGFEGSRGWI NLATQYRRLI EPLDISNYHG QLKNEDTGPY MLHGRPSRYK
501: YAQRGYEHDI LKPTGMIAKD VFWSKVNGLN LGLQQDIQEI LKNSGSECGS CFWAEVEELK GKPYEEVQVR FKTLEGLLEG WIKDGEVDEK EIFLEGSTFR
601: KWWNTLPDSH KIHAPLYPRE RMMDETRAT
Arabidopsis Description
EDS1BProtein EDS1B [Source:UniProtKB/Swiss-Prot;Acc:Q9SU71]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.