CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	cytosol, endoplasmic reticulum, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68479
CDX68481
CDX83034
CDX83035
CDY44979
CDY68128

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52430.1	CDX68479	AT3G48090.1	11574472
AT3G52430.1	CDX68481	AT3G48090.1	11574472
AT3G52430.1	CDX83034	AT3G48090.1	11574472
AT3G52430.1	CDX83035	AT3G48090.1	11574472
AT3G52430.1	CDY44979	AT3G48090.1	11574472
AT3G52430.1	CDY68128	AT3G48090.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90603	Canola	plasma membrane	91.8	80.0
CDY23217	Canola	plastid	58.11	74.19
CDY67344	Canola	plastid	57.01	72.79
CDX73637	Canola	cytosol, nucleus, peroxisome	72.5	72.63
CDX78091	Canola	cytosol, nucleus, peroxisome	72.13	72.39
CDY69054	Canola	cytosol	54.46	67.65
CDY68190	Canola	cytosol	38.25	66.25
AT3G52430.1	Thale cress	cytosol, nucleus, peroxisome	62.48	63.4
VIT_07s0031g02390.t01	Wine grape	cytosol	42.44	37.64
PGSC0003DMT400051170	Potato	cytosol	38.25	36.33
Solyc02g032850.2.1	Tomato	cytosol	37.52	35.64
KRH53943	Soybean	cytosol, nucleus, peroxisome	40.98	35.55
KRH40959	Soybean	cytosol	40.26	34.91
KRH63997	Soybean	cytosol, nucleus, peroxisome	39.71	34.44
KRH59603	Soybean	plastid	31.69	33.27
GSMUA_Achr2P20660_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	36.25	32.62
GSMUA_Achr6P12900_001	Banana	cytosol	35.7	32.5
Zm00001d004706_P002	Maize	cytosol, peroxisome, plastid	35.88	30.26
TraesCS4A01G216100.1	Wheat	peroxisome	34.24	28.88
EES08158	Sorghum	cytosol, peroxisome, plastid	34.79	28.51
TraesCS4D01G096400.2	Wheat	peroxisome	33.7	28.37
TraesCS4B01G100100.1	Wheat	peroxisome	33.7	28.37
Zm00001d053138_P002	Maize	cytosol, peroxisome, plastid	33.88	28.22
Os11t0195500-01	Rice	mitochondrion	26.41	27.1
HORVU4Hr1G043530.1	Barley	mitochondrion	34.06	26.56
CDY09899	Canola	extracellular, vacuole	23.32	23.62
CDY09901	Canola	cytosol, endoplasmic reticulum, nucleus	16.39	23.44
CDX70581	Canola	cytosol	22.4	23.38
CDX70584	Canola	cytosol	21.86	22.81
CDX78600	Canola	extracellular	21.86	22.47
CDY69990	Canola	endoplasmic reticulum	22.95	22.22
CDX70582	Canola	cytosol	20.77	21.97
CDY00844	Canola	extracellular	2.55	21.54
CDX78601	Canola	nucleus	18.58	20.32
CDX68479	Canola	cytosol, extracellular, plastid	19.31	20.15
CDX83034	Canola	cytosol, extracellular, plastid	19.31	20.15
CDX83035	Canola	cytosol	20.4	19.31
CDY68128	Canola	cytosol	20.95	19.17
CDY44979	Canola	cytosol	20.58	18.83
CDY29080	Canola	extracellular	2.37	18.57
CDX68481	Canola	cytosol	15.3	16.63

Protein Annotations

EnsemblPlants:CDY29081	EnsemblPlantsGene:GSBRNA2T00041829001	Gene3D:3.40.50.1820	GO:A0A078GU91	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:AB_hydrolase	InterPro:Fungal_lipase-like
InterPro:IPR029058	PANTHER:PTHR21493	PANTHER:PTHR21493:SF130	PFAM:PF01764	ProteinID:CDY29081	ProteinID:CDY29081.1
SEG:seg	SUPFAM:SSF53474	UniParc:UPI0004EBCBF7	UniProt:A0A078GU91	MapMan:26.8.2.4.2	:

Description

BnaC07g32870DBnaC07g32870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GU91]

Coordinates

chrLK032229:+:474917..479244

Molecular Weight (calculated)

62207.4 Da

IEP (calculated)

4.880

GRAVY (calculated)

-0.329

Length

549 amino acids

Sequence
(BLAST)

001: MEECQFETSE LLASLMMSTP LWSDSWSLCN LADSSKSIQI QRIAGTMYVA LPEVEMNQPG NLVDLKVDGN ELFSAFSTSS TSDEPPPMVN GAILDLFVSS
101: ALFIESQITI GLEKEDREQV VITGYSTGGA VAALTALWLL SVPLSPSYPL LCITFGSPLL GNQSLSSSIS QSHVAQNFCH VVSIHDLVPR RNDEPLWPFG
201: TYLFCSDNGG VCLDNAASVR RMFHILNSTG TPNIEERQRY EHYVSTLSHQ FLISRSFHSG DISDNSYEAG VALAVESLGF SVDHPSGVSA KECIETATRM
301: SRARIERASE LAIELGDVLP SRLDIQWYKD SCDASPKKLG YYDNFKLYSN QRELRVNMSR AKLAKFWDRV YDMVETNELP PDFDFELKWL FASQFYQLLA
401: EPLDIAYFYK YKYSKTGNGH YMENGNRPKR YLLFDKWWKE KGECHRVKTA RTRYASTTQD TCFWAKVEEA KEWLDDVRSE GTNEQRRALL WEKIVGFEIY
501: ADTLVKMKDV SLDVLAENSS HRVWKKKLTE FKKDNGIGMV ADESDAMET

Best Arabidopsis Sequence Match ( AT3G52430.1 )
(BLAST)

001: MDDCRFETSE LQASVMISTP LFTDSWSSCN TANCNGSIKI HDIAGITYVA IPAVSMIQLG NLVGLPVTGD VLFPGLSSDE PLPMVDAAIL KLFLQLKIKE
101: GLELELLGKK LVVITGHSTG GALAAFTALW LLSQSSPPSF RVFCITFGSP LLGNQSLSTS ISRSRLAHNF CHVVSIHDLV PRSSNEQFWP FGTYLFCSDK
201: GGVCLDNAGS VRLMFNILNT TATQNTEEHQ RYGHYVFTLS HMFLKSRSFL GGSIPDNSYQ AGVALAVEAL GFSNDDTSGV LVKECIETAT RIVRAPILRS
301: AELANELASV LPARLEIQWY KDRCDASEEQ LGYYDFFKRY SLKRDFKVNM SRIRLAKFWD TVIKMVETNE LPFDFHLGKK WIYASQFYQL LAEPLDIANF
401: YKNRDIKTGG HYLEGNRPKR YEVIDKWQKG VKVPEECVRS RYASTTQDTC FWAKLEQAKE WLDEARKESS DPQRRSLLRE KIVPFESYAN TLVTKKEVSL
501: DVKAKNSSYS VWEANLKEFK CKMGYENEIE MVVDESDAME T

Arabidopsis Description

PAD4Lipase-like PAD4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S745]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.