Factsheet for GSMUA_Achr2P20660_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr8P25290_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52430.1	GSMUA_Achr8P25290_001	AT3G48090.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P12900_001	Banana	cytosol	60.49	61.19
EES08158	Sorghum	cytosol, peroxisome, plastid	47.87	43.58
Zm00001d004706_P002	Maize	cytosol, peroxisome, plastid	45.74	42.86
Os11t0195500-01	Rice	mitochondrion	36.89	42.06
Zm00001d053138_P002	Maize	cytosol, peroxisome, plastid	45.25	41.88
TraesCS4D01G096400.2	Wheat	peroxisome	44.59	41.72
TraesCS4A01G216100.1	Wheat	peroxisome	44.43	41.63
TraesCS4B01G100100.1	Wheat	peroxisome	44.43	41.56
PGSC0003DMT400051170	Potato	cytosol	39.34	41.52
VIT_07s0031g02390.t01	Wine grape	cytosol	41.64	41.03
Solyc02g032850.2.1	Tomato	cytosol	38.52	40.66
KRH53943	Soybean	cytosol, nucleus, peroxisome	41.97	40.44
Bra033431.1-P	Field mustard	plastid	28.36	40.23
CDY23217	Canola	plastid	28.36	40.23
CDY67344	Canola	plastid	28.03	39.77
KRH63997	Soybean	cytosol, nucleus, peroxisome	40.66	39.18
CDY68190	Canola	cytosol	20.0	38.49
HORVU4Hr1G043530.1	Barley	mitochondrion	44.26	38.35
KRH40959	Soybean	cytosol	39.67	38.23
AT3G52430.1	Thale cress	cytosol, nucleus, peroxisome	32.95	37.15
CDY69054	Canola	cytosol	26.89	37.1
CDY29081	Canola	cytosol, endoplasmic reticulum, peroxisome	32.62	36.25
Bra006922.1-P	Field mustard	cytosol, nucleus, peroxisome	31.8	35.47
CDX78091	Canola	cytosol, nucleus, peroxisome	31.8	35.47
CDX73637	Canola	cytosol, nucleus, peroxisome	31.8	35.4
KRH59603	Soybean	plastid	29.84	34.8
CDX90603	Canola	plasma membrane	32.13	31.11
Bra012805.1-P	Field mustard	plasma membrane	32.13	31.11
GSMUA_Achr8P25290_001	Banana	plastid	24.1	22.86

Protein Annotations

EnsemblPlants:GSMUA_Achr2P20660_001	EnsemblPlants:GSMUA_Achr2T20660_001	EnsemblPlantsGene:GSMUA_Achr2G20660_001	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:AB_hydrolase	InterPro:Fungal_lipase-like
InterPro:IPR029058	PANTHER:PTHR21493	PANTHER:PTHR21493:SF130	PFAM:PF01764	SEG:seg	SignalP:SignalP-noTM
SUPFAM:SSF53474	UniParc:UPI000294D750	UniProt:M0S9Q7	MapMan:26.8.2.4.2	:	:

Description

lipase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G20660_001]

Coordinates

chr2:+:20443719..20446726

Molecular Weight (calculated)

67759.1 Da

IEP (calculated)

8.792

GRAVY (calculated)

-0.272

Length

610 amino acids

Sequence
(BLAST)

001: MAKRFETSHV LGALLAASPL LAQSWSHCTH ANASNSSFVV EHHDDTVYVA FSGTQTSALS SSVAGGLGGE LFGPVPISTG GGQELFAPLV GGKGDDAQPV
101: LVQAAALHLF LSLYNSSEFQ VSSSVNKTGK TQKFCKSVVL TGHSMGGCVA SLVALHFLCS SSGSSSPSPA SLLCITFGSP LLGDDALSRA VLRERWSGRF
201: CHVVAQHDIM PRLLLCPQIS PYRPFGNHAL CSAEGAACID DPFMVVKLLH LTFMVDPGSS SIEEQHISYG DLVAEISQNV LSKKRIHVEE EPTRSSGYSA
301: GVSMALEASG IRIQDMGAVE ARECLETRMW RRPNMNCASL AIKLAKVTPC RAQIEWYKTL CDDDMGYYDC FKHRKAAKRD AKVNMNRIKL GHFWDGLLAK
401: LQDNELPHDF HKRSKWVNAA QFYKLLVEPL DIAEYYRCKL HETRGHYLPH GRERRYEVFD RWWNEGKEEV REAATWKKRR SKFAGLTQDS CFWAKVEEAR
501: ECVKRARAEK NPAKLVKLWE SINGFESFAN RLMERKEVSV DVMAPRSSYS LWVEEVKELK LKQACSVSSS SGLVGVSGGG HYLTAKRNNK YLTSYQKKTK
601: KKGKYFLCLC

Best Arabidopsis Sequence Match ( AT3G52430.1 )
(BLAST)

001: MDDCRFETSE LQASVMISTP LFTDSWSSCN TANCNGSIKI HDIAGITYVA IPAVSMIQLG NLVGLPVTGD VLFPGLSSDE PLPMVDAAIL KLFLQLKIKE
101: GLELELLGKK LVVITGHSTG GALAAFTALW LLSQSSPPSF RVFCITFGSP LLGNQSLSTS ISRSRLAHNF CHVVSIHDLV PRSSNEQFWP FGTYLFCSDK
201: GGVCLDNAGS VRLMFNILNT TATQNTEEHQ RYGHYVFTLS HMFLKSRSFL GGSIPDNSYQ AGVALAVEAL GFSNDDTSGV LVKECIETAT RIVRAPILRS
301: AELANELASV LPARLEIQWY KDRCDASEEQ LGYYDFFKRY SLKRDFKVNM SRIRLAKFWD TVIKMVETNE LPFDFHLGKK WIYASQFYQL LAEPLDIANF
401: YKNRDIKTGG HYLEGNRPKR YEVIDKWQKG VKVPEECVRS RYASTTQDTC FWAKLEQAKE WLDEARKESS DPQRRSLLRE KIVPFESYAN TLVTKKEVSL
501: DVKAKNSSYS VWEANLKEFK CKMGYENEIE MVVDESDAME T

Arabidopsis Description

PAD4Lipase-like PAD4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S745]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.