Factsheet for Bra006922.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018085.1-P
Bra033774.1-P
Bra033775.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52430.1	Bra018085.1-P	AT3G48090.1	11574472
AT3G52430.1	Bra033774.1-P	AT3G48090.1	11574472
AT3G52430.1	Bra033775.1-P	AT3G48090.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78091	Canola	cytosol, nucleus, peroxisome	98.72	98.72
Bra033431.1-P	Field mustard	plastid	60.33	76.74
AT3G52430.1	Thale cress	cytosol, nucleus, peroxisome	65.08	65.8
Bra012805.1-P	Field mustard	plasma membrane	73.67	63.97
VIT_07s0031g02390.t01	Wine grape	cytosol	42.05	37.16
KRH53943	Soybean	cytosol, nucleus, peroxisome	41.86	36.18
PGSC0003DMT400051170	Potato	cytosol	38.03	35.99
KRH63997	Soybean	cytosol, nucleus, peroxisome	40.77	35.23
Solyc02g032850.2.1	Tomato	cytosol	36.56	34.6
KRH40959	Soybean	cytosol	40.04	34.6
KRH59603	Soybean	plastid	32.36	33.84
GSMUA_Achr6P12900_001	Banana	cytosol	35.28	32.01
GSMUA_Achr2P20660_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	35.47	31.8
Zm00001d004706_P002	Maize	cytosol, peroxisome, plastid	35.83	30.11
Zm00001d053138_P002	Maize	cytosol, peroxisome, plastid	35.1	29.14
EES08158	Sorghum	cytosol, peroxisome, plastid	35.65	29.1
TraesCS4B01G100100.1	Wheat	peroxisome	34.0	28.53
TraesCS4D01G096400.2	Wheat	peroxisome	34.0	28.53
TraesCS4A01G216100.1	Wheat	peroxisome	33.64	28.26
Os11t0195500-01	Rice	mitochondrion	27.24	27.85
HORVU4Hr1G043530.1	Barley	mitochondrion	34.19	26.56
Bra008729.1-P	Field mustard	cytosol	21.39	22.24
Bra006274.1-P	Field mustard	nucleus	19.56	21.36
Bra033775.1-P	Field mustard	cytosol	21.02	19.17
Bra018085.1-P	Field mustard	cytosol	20.66	18.83
Bra033774.1-P	Field mustard	cytosol	19.56	18.07
Bra008731.1-P	Field mustard	extracellular, plasma membrane, vacuole	21.75	16.71

Protein Annotations

EnsemblPlants:Bra006922.1	EnsemblPlants:Bra006922.1-P	EnsemblPlantsGene:Bra006922	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:AB_hydrolase	InterPro:Fungal_lipase-like
InterPro:IPR029058	ncoils:Coil	PANTHER:PTHR21493	PANTHER:PTHR21493:SF130	PFAM:PF01764	SEG:seg
SUPFAM:SSF53474	UniParc:UPI0002542E2E	UniProt:M4CRT0	MapMan:26.8.2.4.2	:	:

Description

AT3G52430 (E=8e-195) PAD4, ATPAD4 | PAD4 (PHYTOALEXIN DEFICIENT 4); lipase/ protein binding / triacylglycerol lipase

Coordinates

chrA09:+:26188117..26192398

Molecular Weight (calculated)

61660.1 Da

IEP (calculated)

7.097

GRAVY (calculated)

-0.341

Length

547 amino acids

Sequence
(BLAST)

001: MEECRFETSE LQASFMMSTP LWSNSWILCN AADSAGNIQI QHVAGIMYVA LPKVEMNQPG SLVDVEVVGD GFFSALSSSL PSGEPPLMVN GAIRDLFVSS
101: GRLIQTQITQ GLEVEETKQV VITGHSTGGA LAALTALWLL SQPSPPPFRL LCISFGSPLL GNQSLSSSVT RSRLAHKFCH VVSVHDHVPR GNDDRFWPFG
201: TYLFCSDSGG LCLDNADSVR GMFRILNSTG TPNIEEHQRY GHYVSTLSHQ FLISRTFRGG RISDNSYEAG VALAVESLGF SNDQPSGVSV KECIETATTI
301: SRAPILRSSE LAIELGNVVP YRLEIQWYKD SCEASPKKLG YYDNFKNFSN QRELRVNMSR AKLAKFWDGV FEMVEKNELP FDFHLGKKWV YASQFYQLLA
401: EPLDIAYFYK YTYSRTTGHY MKTGNRPKRY EVIDKWWKAR GEPHKEKRAR TRYASTTQDT CFWAKLEEAK ECLDDLTCES SDAQKQTLLR KKIYEFERYS
501: ATLVKMKEVS KDVLATNSSY NVWVKKLSEF KSKMSNGVID ESDAMET

Best Arabidopsis Sequence Match ( AT3G52430.1 )
(BLAST)

001: MDDCRFETSE LQASVMISTP LFTDSWSSCN TANCNGSIKI HDIAGITYVA IPAVSMIQLG NLVGLPVTGD VLFPGLSSDE PLPMVDAAIL KLFLQLKIKE
101: GLELELLGKK LVVITGHSTG GALAAFTALW LLSQSSPPSF RVFCITFGSP LLGNQSLSTS ISRSRLAHNF CHVVSIHDLV PRSSNEQFWP FGTYLFCSDK
201: GGVCLDNAGS VRLMFNILNT TATQNTEEHQ RYGHYVFTLS HMFLKSRSFL GGSIPDNSYQ AGVALAVEAL GFSNDDTSGV LVKECIETAT RIVRAPILRS
301: AELANELASV LPARLEIQWY KDRCDASEEQ LGYYDFFKRY SLKRDFKVNM SRIRLAKFWD TVIKMVETNE LPFDFHLGKK WIYASQFYQL LAEPLDIANF
401: YKNRDIKTGG HYLEGNRPKR YEVIDKWQKG VKVPEECVRS RYASTTQDTC FWAKLEQAKE WLDEARKESS DPQRRSLLRE KIVPFESYAN TLVTKKEVSL
501: DVKAKNSSYS VWEANLKEFK CKMGYENEIE MVVDESDAME T

Arabidopsis Description

PAD4Lipase-like PAD4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S745]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.