CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68479
CDX68481
CDX83034
CDX83035
CDY44979
CDY68128

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52430.1	CDX68479	AT3G48090.1	11574472
AT3G52430.1	CDX68481	AT3G48090.1	11574472
AT3G52430.1	CDX83034	AT3G48090.1	11574472
AT3G52430.1	CDX83035	AT3G48090.1	11574472
AT3G52430.1	CDY44979	AT3G48090.1	11574472
AT3G52430.1	CDY68128	AT3G48090.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012805.1-P	Field mustard	plasma membrane	99.68	99.68
CDY29081	Canola	cytosol, endoplasmic reticulum, peroxisome	80.0	91.8
CDY23217	Canola	plastid	50.79	74.42
CDX73637	Canola	cytosol, nucleus, peroxisome	64.44	74.09
CDX78091	Canola	cytosol, nucleus, peroxisome	64.13	73.86
CDY67344	Canola	plastid	49.37	72.33
CDY69054	Canola	cytosol	46.67	66.52
CDY68190	Canola	cytosol	33.17	65.93
AT3G52430.1	Thale cress	cytosol, nucleus, peroxisome	55.08	64.14
VIT_07s0031g02390.t01	Wine grape	cytosol	36.51	37.16
PGSC0003DMT400051170	Potato	cytosol	32.7	35.64
KRH53943	Soybean	cytosol, nucleus, peroxisome	35.4	35.23
Solyc02g032850.2.1	Tomato	cytosol	32.22	35.12
KRH40959	Soybean	cytosol	34.92	34.76
KRH63997	Soybean	cytosol, nucleus, peroxisome	34.76	34.6
KRH59603	Soybean	plastid	27.78	33.46
GSMUA_Achr6P12900_001	Banana	cytosol	31.27	32.67
GSMUA_Achr2P20660_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	31.11	32.13
Zm00001d004706_P002	Maize	cytosol, peroxisome, plastid	30.79	29.8
EES08158	Sorghum	cytosol, peroxisome, plastid	30.32	28.51
TraesCS4A01G216100.1	Wheat	peroxisome	29.21	28.26
Zm00001d053138_P002	Maize	cytosol, peroxisome, plastid	29.52	28.22
TraesCS4D01G096400.2	Wheat	peroxisome	29.05	28.07
TraesCS4B01G100100.1	Wheat	peroxisome	28.89	27.91
Os11t0195500-01	Rice	mitochondrion	22.86	26.92
HORVU4Hr1G043530.1	Barley	mitochondrion	30.0	26.85
CDY09901	Canola	cytosol, endoplasmic reticulum, nucleus	14.6	23.96
CDY09899	Canola	extracellular, vacuole	20.32	23.62
CDX70581	Canola	cytosol	19.37	23.19
CDY00844	Canola	extracellular	2.38	23.08
CDY69990	Canola	endoplasmic reticulum	20.48	22.75
CDX70584	Canola	cytosol	18.89	22.62
CDX78600	Canola	extracellular	19.05	22.47
CDX70582	Canola	cytosol	18.41	22.35
CDX78601	Canola	nucleus	16.03	20.12
CDX68479	Canola	cytosol, extracellular, plastid	16.51	19.77
CDX83034	Canola	cytosol, extracellular, plastid	16.51	19.77
CDY68128	Canola	cytosol	18.1	19.0
CDY44979	Canola	cytosol	17.78	18.67
CDY29080	Canola	extracellular	2.06	18.57
CDX83035	Canola	cytosol	16.98	18.45
CDX68481	Canola	cytosol	12.86	16.04

Protein Annotations

EnsemblPlants:CDX90603	EnsemblPlantsGene:GSBRNA2T00151242001	Gene3D:3.40.50.1820	GO:A0A078DTW4	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	InterPro:AB_hydrolase	InterPro:Fungal_lipase-like	InterPro:IPR029058	PANTHER:PTHR21493	PANTHER:PTHR21493:SF130
PFAM:PF01764	ProteinID:CDX90603	ProteinID:CDX90603.1	SEG:seg	SUPFAM:SSF53474	TMHMM:TMhelix
UniParc:UPI0004EDE3E9	MapMan:26.8.2.4.2	:	:	:	:

Description

BnaA03g41780D

Coordinates

chrLK031863:-:1073861..1079810

Molecular Weight (calculated)

70549.1 Da

IEP (calculated)

4.801

GRAVY (calculated)

-0.309

Length

630 amino acids

Sequence
(BLAST)

001: MGKASGAKQA TVVVAALAFG WLAIEIAFKP FLDKLRSSID KSNPAKDPDD SDKDAAFAAA AAASETTSSV PSLTTQTTQV VMEECQFETS ELQASLMMST
101: PLWSDSWSLC NVADSSKSIQ IQRIAGTMYV ALPEVEMNQP GNLVDLKVAG NELFSAFSTS STSDEPPPMV NGAILELFVS SALFIESQIT RGLEKEDREQ
201: VVITGYSTGG TVAALTALWL LSVPLSPSYP LLCITFGSPL LGNQSLSSSI SRSHVAQNFC HVVSIHDLVP RRNDEQLWPF GTYLFCSDNG GLCLDNAASV
301: RRMFHILNST GTPNIEERQR YEHYVSTLSR QFLISRSSLS ENISDNSYDA GVALAVESLG FSDDHPSGVS AKECIETATR ISRAPIERAS ELAIELGDVL
401: PSRLEIQWYK DSCEASPKKL GYYDNFKLYS NPRELKVNMS RAKLAKFWDR VYDMVETNEL PPDFDFELKW LFASQFYQLL AEPLDIAYFY KYKYSRTGTG
501: HYMENGNRPK RYLLFDKWWK ERGECHRVKT ARTRYASTTQ DTCFWAKVEE AKEWLDDVRS EGTNEQRRAS LWEKIVGFEI YANTLVKMKD VSLDVLAENS
601: SYRVWEKKLT EFKKDNGIGM VADESDAMET

Best Arabidopsis Sequence Match ( AT3G52430.1 )
(BLAST)

001: MDDCRFETSE LQASVMISTP LFTDSWSSCN TANCNGSIKI HDIAGITYVA IPAVSMIQLG NLVGLPVTGD VLFPGLSSDE PLPMVDAAIL KLFLQLKIKE
101: GLELELLGKK LVVITGHSTG GALAAFTALW LLSQSSPPSF RVFCITFGSP LLGNQSLSTS ISRSRLAHNF CHVVSIHDLV PRSSNEQFWP FGTYLFCSDK
201: GGVCLDNAGS VRLMFNILNT TATQNTEEHQ RYGHYVFTLS HMFLKSRSFL GGSIPDNSYQ AGVALAVEAL GFSNDDTSGV LVKECIETAT RIVRAPILRS
301: AELANELASV LPARLEIQWY KDRCDASEEQ LGYYDFFKRY SLKRDFKVNM SRIRLAKFWD TVIKMVETNE LPFDFHLGKK WIYASQFYQL LAEPLDIANF
401: YKNRDIKTGG HYLEGNRPKR YEVIDKWQKG VKVPEECVRS RYASTTQDTC FWAKLEQAKE WLDEARKESS DPQRRSLLRE KIVPFESYAN TLVTKKEVSL
501: DVKAKNSSYS VWEANLKEFK CKMGYENEIE MVVDESDAME T

Arabidopsis Description

PAD4Lipase-like PAD4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S745]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.