CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY36901
CDY44976
CDY58069
CDY58070
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04390.1	CDY36901	AT3G48150.1	21798944
AT2G04390.1	CDY44976	AT3G48150.1	21798944
AT2G04390.1	CDY58069	AT3G48150.1	21798944
AT2G04390.1	CDY58070	AT3G48150.1	21798944
AT2G04390.1	CDY70805	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11309	Canola	cytosol	88.97	89.63
AT5G04800.2	Thale cress	cytosol	92.65	89.36
AT2G05220.1	Thale cress	cytosol	91.91	89.29
AT2G04390.1	Thale cress	cytosol	91.91	88.65
CDY00960	Canola	cytosol	90.44	88.49
CDY44878	Canola	cytosol	88.24	88.24
CDX70203	Canola	cytosol	88.24	88.24
CDY47259	Canola	cytosol	88.24	87.59
CDX80997	Canola	cytosol	87.5	86.86
KRH32794	Soybean	cytosol	86.76	84.89
KRH50389	Soybean	cytosol	79.41	84.38
CDY19565	Canola	cytosol	69.85	84.07
CDY25845	Canola	cytosol	69.85	84.07
CDY48004	Canola	cytosol	69.85	84.07
KRH72240	Soybean	endoplasmic reticulum	86.03	83.57
KRG89343	Soybean	nucleus	82.35	82.96
VIT_08s0007g02620.t01	Wine grape	cytosol	85.29	82.27
Solyc11g006690.1.1	Tomato	nucleus	84.56	79.86
Solyc05g055230.1.1	Tomato	nucleus	83.82	79.17
Bra028778.1-P	Field mustard	cytosol	97.79	74.3
PGSC0003DMT400072583	Potato	cytosol	80.88	72.85
Os10t0411800-01	Rice	nucleus	75.0	72.34
Zm00001d045000_P001	Maize	mitochondrion	75.0	71.83
Os03t0109500-00	Rice	plasma membrane	75.74	71.53
EER88019	Sorghum	cytosol	74.26	71.13
Zm00001d037111_P001	Maize	plastid	74.26	71.13
TraesCS1A01G159100.1	Wheat	nucleus	73.53	69.93
TraesCS1B01G174800.1	Wheat	golgi, unclear	73.53	69.93
TraesCS1D01G156400.2	Wheat	golgi	73.53	69.93
CDY14138	Canola	nucleus	94.85	69.73
GSMUA_Achr5P10190_001	Banana	cytosol	24.26	68.75
KRH30810	Soybean	cytosol, endoplasmic reticulum	43.38	67.05
HORVU1Hr1G042220.1	Barley	nucleus	72.79	56.25

Protein Annotations

Gene3D:1.10.60.20	MapMan:17.1.3.1.19	GO:A0A078EVB6	EnsemblPlants:CDY04927	ProteinID:CDY04927	ProteinID:CDY04927.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00119650001	InterPro:IPR036401	HAMAP:MF_00511	PFAM:PF00833
ScanProsite:PS00712	PANTHER:PTHR10732	PANTHER:PTHR10732:SF2	InterPro:RPS17e-like_sf	InterPro:Ribosomal_S17e	InterPro:Ribosomal_S17e_CS
SUPFAM:SSF116820	UniParc:UPI0001BA8406	:	:	:	:

Description

BnaAnng01090D

Coordinates

chrLK031958:+:726676..727535

Molecular Weight (calculated)

15599.2 Da

IEP (calculated)

10.720

GRAVY (calculated)

-0.589

Length

136 amino acids

Sequence
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDVPGVSVV EPQAVAPAFG RPPRRY

Best Arabidopsis Sequence Match ( AT5G04800.1 )
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y

Arabidopsis Description

RPS17D40S ribosomal protein S17-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.