CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24006
KRH27971
KRH29310
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04390.1	KRH24006	AT3G48150.1	21798944
AT2G04390.1	KRH27971	AT3G48150.1	21798944
AT2G04390.1	KRH29310	AT3G48150.1	21798944
AT2G04390.1	KRH77487	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89343	Soybean	nucleus	90.91	59.26
KRH50389	Soybean	cytosol	79.55	54.69
KRH72240	Soybean	endoplasmic reticulum	73.86	46.43
KRH32794	Soybean	cytosol	72.73	46.04
VIT_08s0007g02620.t01	Wine grape	cytosol	70.45	43.97
Bra005887.1-P	Field mustard	cytosol	68.18	43.8
CDY47259	Canola	cytosol	68.18	43.8
CDX80997	Canola	cytosol	68.18	43.8
CDY04927	Canola	cytosol	67.05	43.38
AT5G04800.2	Thale cress	cytosol	67.05	41.84
AT2G04390.1	Thale cress	cytosol	67.05	41.84
Bra005820.1-P	Field mustard	cytosol	63.64	41.48
CDY11309	Canola	cytosol	63.64	41.48
AT2G05220.1	Thale cress	cytosol	65.91	41.43
CDX70203	Canola	cytosol	63.64	41.18
CDY44878	Canola	cytosol	63.64	41.18
Bra009431.1-P	Field mustard	cytosol	63.64	41.18
AT3G10610.1	Thale cress	cytosol	64.77	40.71
Solyc11g006690.1.1	Tomato	nucleus	64.77	39.58
CDY00960	Canola	cytosol	62.5	39.57
Solyc05g055230.1.1	Tomato	nucleus	63.64	38.89
CDY48004	Canola	cytosol	48.86	38.05
CDY25845	Canola	cytosol	48.86	38.05
CDY19565	Canola	cytosol	48.86	38.05
Bra002983.1-P	Field mustard	cytosol	48.86	38.05
PGSC0003DMT400072583	Potato	cytosol	61.36	35.76
Os03t0109500-00	Rice	plasma membrane	57.95	35.42
TraesCS1B01G174800.1	Wheat	golgi, unclear	55.68	34.27
EER88019	Sorghum	cytosol	54.55	33.8
Zm00001d037111_P001	Maize	plastid	54.55	33.8
Zm00001d045000_P001	Maize	mitochondrion	54.55	33.8
TraesCS1A01G159100.1	Wheat	nucleus	54.55	33.57
TraesCS1D01G156400.2	Wheat	golgi	54.55	33.57
Os10t0411800-01	Rice	nucleus	53.41	33.33
Bra028778.1-P	Field mustard	cytosol	64.77	31.84
CDY14138	Canola	nucleus	65.91	31.35
GSMUA_Achr5P10190_001	Banana	cytosol	17.05	31.25
HORVU1Hr1G042220.1	Barley	nucleus	54.55	27.27

Protein Annotations

Gene3D:1.10.60.20	MapMan:35.1	EMBL:ACUP02007074	EnsemblPlantsGene:GLYMA_11G208000	GO:GO:0000028	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022627	InterPro:IPR036401	UniProt:K7LRE0
EnsemblPlants:KRH30810	ProteinID:KRH30810	ProteinID:KRH30810.1	PFAM:PF00833	PANTHER:PTHR10732	PANTHER:PTHR10732:SF2
InterPro:RPS17e-like_sf	InterPro:Ribosomal_S17e	SUPFAM:SSF116820	UniParc:UPI0002956AFD	:	:

Description

hypothetical protein

Coordinates

chr11:-:29746069..29746407

Molecular Weight (calculated)

10296.4 Da

IEP (calculated)

4.850

GRAVY (calculated)

-0.422

Length

88 amino acids

Sequence
(BLAST)

1: MTLDFHTNKK LLEEVAIIPS KRLRNKIEEE RECRMDFVPD VFAINTDHIE VDKETLDMLH SLGINDIPGI TQVDPVPVQQ SFPFTRRY

Best Arabidopsis Sequence Match ( AT5G04800.1 )
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y

Arabidopsis Description

RPS17D40S ribosomal protein S17-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.