Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 4
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_07s0031g02330.t01 | |
| VIT_07s0130g00490.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G04390.1 | VIT_07s0031g02330.t01 | AT3G48150.1 | 21798944 |
| AT2G04390.1 | VIT_07s0130g00490.t01 | AT3G48150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH50389 | Soybean | cytosol | 78.72 | 86.72 |
| CDY47259 | Canola | cytosol | 83.69 | 86.13 |
| KRH32794 | Soybean | cytosol | 84.4 | 85.61 |
| Bra005887.1-P | Field mustard | cytosol | 82.98 | 85.4 |
| CDY04927 | Canola | cytosol | 82.27 | 85.29 |
| KRG89343 | Soybean | nucleus | 81.56 | 85.19 |
| CDX80997 | Canola | cytosol | 82.27 | 84.67 |
| KRH72240 | Soybean | endoplasmic reticulum | 83.69 | 84.29 |
| VIT_13s0073g00120.t01 | Wine grape | cytosol | 82.98 | 81.25 |
| AT5G04800.2 | Thale cress | cytosol | 80.85 | 80.85 |
| AT2G05220.1 | Thale cress | cytosol | 80.14 | 80.71 |
| Bra005820.1-P | Field mustard | cytosol | 76.6 | 80.0 |
| CDY11309 | Canola | cytosol | 76.6 | 80.0 |
| CDY48004 | Canola | cytosol | 63.83 | 79.65 |
| CDY25845 | Canola | cytosol | 63.83 | 79.65 |
| CDY19565 | Canola | cytosol | 63.83 | 79.65 |
| Bra002983.1-P | Field mustard | cytosol | 63.83 | 79.65 |
| AT2G04390.1 | Thale cress | cytosol | 79.43 | 79.43 |
| CDY44878 | Canola | cytosol | 76.6 | 79.41 |
| CDX70203 | Canola | cytosol | 76.6 | 79.41 |
| Bra009431.1-P | Field mustard | cytosol | 76.6 | 79.41 |
| Solyc11g006690.1.1 | Tomato | nucleus | 80.85 | 79.17 |
| Solyc05g055230.1.1 | Tomato | nucleus | 80.14 | 78.47 |
| CDY00960 | Canola | cytosol | 77.31 | 78.42 |
| AT3G10610.1 | Thale cress | cytosol | 77.31 | 77.86 |
| TraesCS1B01G174800.1 | Wheat | golgi, unclear | 74.47 | 73.43 |
| Os03t0109500-00 | Rice | plasma membrane | 74.47 | 72.92 |
| PGSC0003DMT400072583 | Potato | cytosol | 78.01 | 72.85 |
| TraesCS1D01G156400.2 | Wheat | golgi | 73.05 | 72.03 |
| TraesCS1A01G159100.1 | Wheat | nucleus | 73.05 | 72.03 |
| Zm00001d045000_P001 | Maize | mitochondrion | 72.34 | 71.83 |
| Os10t0411800-01 | Rice | nucleus | 71.63 | 71.63 |
| EER88019 | Sorghum | cytosol | 71.63 | 71.13 |
| Zm00001d037111_P001 | Maize | plastid | 71.63 | 71.13 |
| KRH30810 | Soybean | cytosol, endoplasmic reticulum | 43.97 | 70.45 |
| GSMUA_Achr5P10190_001 | Banana | cytosol | 23.4 | 68.75 |
| Bra028778.1-P | Field mustard | cytosol | 80.85 | 63.69 |
| CDY14138 | Canola | nucleus | 80.14 | 61.08 |
| HORVU1Hr1G042220.1 | Barley | nucleus | 73.76 | 59.09 |
Protein Annotations
| Gene3D:1.10.60.20 | EntrezGene:100256195 | wikigene:100256195 | MapMan:17.1.3.1.19 | EMBL:AM450949 | ProteinID:CAN65385 |
| ProteinID:CAN65385.1 | ProteinID:CBI30359 | ProteinID:CBI30359.3 | UniProt:D7TH43 | EMBL:FN595991 | GO:GO:0000028 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0022627 | InterPro:IPR036401 |
| EntrezGene:LOC100256195 | wikigene:LOC100256195 | HAMAP:MF_00511 | PFAM:PF00833 | ScanProsite:PS00712 | PANTHER:PTHR10732 |
| PANTHER:PTHR10732:SF2 | InterPro:RPS17e-like_sf | InterPro:Ribosomal_S17e | InterPro:Ribosomal_S17e_CS | SUPFAM:SSF116820 | TIGR:TC59685 |
| UniParc:UPI00015C9BD2 | ArrayExpress:VIT_08s0007g02620 | EnsemblPlantsGene:VIT_08s0007g02620 | EnsemblPlants:VIT_08s0007g02620.t01 | RefSeq:XP_002281256 | RefSeq:XP_002281256.1 |
Description
No Description!
Coordinates
chr8:-:16731316..16731933
Molecular Weight (calculated)
16215.0 Da
IEP (calculated)
10.768
GRAVY (calculated)
-0.496
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVRTKTVK KSSRQVIERY YSRMTLDFHT NKKVLEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDVSA INTDEIPVDK
101: ETLDMLAMLG MNDLPGVVKA EPVVVSSQPA FGRSILDRKR Y
101: ETLDMLAMLG MNDLPGVVKA EPVVVSSQPA FGRSILDRKR Y
001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y
Arabidopsis Description
RPS17D40S ribosomal protein S17-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.