Factsheet for TraesCS1D01G156400.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G251400.1
TraesCS6B01G273900.1
TraesCS6D01G233200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04390.1	TraesCS6A01G251400.1	AT3G48150.1	21798944
AT2G04390.1	TraesCS6B01G273900.1	AT3G48150.1	21798944
AT2G04390.1	TraesCS6D01G233200.1	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G159100.1	Wheat	nucleus	99.3	99.3
TraesCS1B01G174800.1	Wheat	golgi, unclear	98.6	98.6
Zm00001d037111_P001	Maize	plastid	85.31	85.92
EER88019	Sorghum	cytosol	85.31	85.92
Zm00001d045000_P001	Maize	mitochondrion	84.62	85.21
Os10t0411800-01	Rice	nucleus	83.92	85.11
HORVU1Hr1G042220.1	Barley	nucleus	96.5	78.41
GSMUA_Achr11P...	Banana	cytosol	73.43	74.47
GSMUA_Achr8P12400_001	Banana	cytosol	73.43	73.94
CDX80997	Canola	cytosol	70.63	73.72
CDY47259	Canola	cytosol	70.63	73.72
CDX70203	Canola	cytosol	69.93	73.53
CDY04927	Canola	cytosol	69.93	73.53
Bra009431.1-P	Field mustard	cytosol	69.93	73.53
CDY44878	Canola	cytosol	69.93	73.53
KRH50389	Soybean	cytosol	65.73	73.44
VIT_08s0007g02620.t01	Wine grape	cytosol	72.03	73.05
Bra005887.1-P	Field mustard	cytosol	69.93	72.99
KRH32794	Soybean	cytosol	69.93	71.94
AT2G04390.1	Thale cress	cytosol	70.63	71.63
AT5G04800.2	Thale cress	cytosol	70.63	71.63
AT2G05220.1	Thale cress	cytosol	69.93	71.43
KRG89343	Soybean	nucleus	67.13	71.11
GSMUA_Achr1P00810_001	Banana	nucleus	72.03	71.03
VIT_13s0073g00120.t01	Wine grape	cytosol	71.33	70.83
CDY48004	Canola	cytosol	55.94	70.8
Bra002983.1-P	Field mustard	cytosol	55.94	70.8
CDY19565	Canola	cytosol	55.94	70.8
CDY25845	Canola	cytosol	55.94	70.8
KRH72240	Soybean	endoplasmic reticulum	69.23	70.71
CDY11309	Canola	cytosol	66.43	70.37
Bra005820.1-P	Field mustard	cytosol	66.43	70.37
AT3G10610.1	Thale cress	cytosol	67.83	69.29
CDY00960	Canola	cytosol	67.13	69.06
PGSC0003DMT400019655	Potato	nucleus	69.23	68.75
Solyc11g006690.1.1	Tomato	nucleus	69.23	68.75
PGSC0003DMT400060127	Potato	extracellular	68.53	68.06
Solyc05g055230.1.1	Tomato	nucleus	68.53	68.06
GSMUA_Achr4P29180_001	Banana	mitochondrion	69.93	59.52
Bra028778.1-P	Field mustard	cytosol	69.93	55.87
KRH30810	Soybean	cytosol, endoplasmic reticulum	33.57	54.55
CDY14138	Canola	nucleus	69.93	54.05

Protein Annotations

Gene3D:1.10.60.20	MapMan:17.1.3.1.19	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036401	HAMAP:MF_00511
PFAM:PF00833	PANTHER:PTHR10732	PANTHER:PTHR10732:SF2	InterPro:RPS17e-like_sf	InterPro:Ribosomal_S17e	SUPFAM:SSF116820
EnsemblPlantsGene:TraesCS1D01G156400	EnsemblPlants:TraesCS1D01G156400.2	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:220426921..220427352

Molecular Weight (calculated)

16479.1 Da

IEP (calculated)

10.881

GRAVY (calculated)

-0.738

Length

143 amino acids

Sequence
(BLAST)

001: MGRVRTKTVK KTSRQVIEKY YSRMTLDFHT NKKVLEEVSI LQSKRLRNKV AGFTTHLMRR IQRGPVRGIS LKLQEEERER RMDFVPEKSA LEVDEIRVDK
101: ETMDMLAFLG MADLPGVERA PETTSAAAPY RQPFNGPRGG NRA

Best Arabidopsis Sequence Match ( AT5G04800.1 )
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y

Arabidopsis Description

RPS17D40S ribosomal protein S17-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.