Subcellular Localization
min:
: max
Winner_takes_all: golgi, unclear
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| golgi:
25769308
unclear: 25769308 |
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G251400.1 | |
| TraesCS6B01G273900.1 | |
| TraesCS6D01G233200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G04390.1 | TraesCS6A01G251400.1 | AT3G48150.1 | 21798944 |
| AT2G04390.1 | TraesCS6B01G273900.1 | AT3G48150.1 | 21798944 |
| AT2G04390.1 | TraesCS6D01G233200.1 | AT3G48150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G156400.2 | Wheat | golgi | 98.6 | 98.6 |
| TraesCS1A01G159100.1 | Wheat | nucleus | 98.6 | 98.6 |
| Zm00001d037111_P001 | Maize | plastid | 86.01 | 86.62 |
| EER88019 | Sorghum | cytosol | 85.31 | 85.92 |
| Os10t0411800-01 | Rice | nucleus | 84.62 | 85.82 |
| Zm00001d045000_P001 | Maize | mitochondrion | 84.62 | 85.21 |
| HORVU1Hr1G042220.1 | Barley | nucleus | 97.9 | 79.55 |
| GSMUA_Achr11P... | Banana | cytosol | 73.43 | 74.47 |
| VIT_08s0007g02620.t01 | Wine grape | cytosol | 73.43 | 74.47 |
| GSMUA_Achr8P12400_001 | Banana | cytosol | 73.43 | 73.94 |
| CDX80997 | Canola | cytosol | 70.63 | 73.72 |
| CDY47259 | Canola | cytosol | 70.63 | 73.72 |
| CDY04927 | Canola | cytosol | 69.93 | 73.53 |
| KRH50389 | Soybean | cytosol | 65.73 | 73.44 |
| Bra005887.1-P | Field mustard | cytosol | 69.93 | 72.99 |
| Bra009431.1-P | Field mustard | cytosol | 69.23 | 72.79 |
| CDX70203 | Canola | cytosol | 69.23 | 72.79 |
| CDY44878 | Canola | cytosol | 69.23 | 72.79 |
| KRH32794 | Soybean | cytosol | 70.63 | 72.66 |
| KRG89343 | Soybean | nucleus | 67.83 | 71.85 |
| AT5G04800.2 | Thale cress | cytosol | 70.63 | 71.63 |
| AT2G04390.1 | Thale cress | cytosol | 70.63 | 71.63 |
| AT2G05220.1 | Thale cress | cytosol | 69.93 | 71.43 |
| KRH72240 | Soybean | endoplasmic reticulum | 69.93 | 71.43 |
| CDY25845 | Canola | cytosol | 55.94 | 70.8 |
| Bra002983.1-P | Field mustard | cytosol | 55.94 | 70.8 |
| CDY19565 | Canola | cytosol | 55.94 | 70.8 |
| CDY48004 | Canola | cytosol | 55.94 | 70.8 |
| CDY11309 | Canola | cytosol | 66.43 | 70.37 |
| Bra005820.1-P | Field mustard | cytosol | 66.43 | 70.37 |
| GSMUA_Achr1P00810_001 | Banana | nucleus | 71.33 | 70.34 |
| VIT_13s0073g00120.t01 | Wine grape | cytosol | 70.63 | 70.14 |
| AT3G10610.1 | Thale cress | cytosol | 67.83 | 69.29 |
| CDY00960 | Canola | cytosol | 67.13 | 69.06 |
| PGSC0003DMT400019655 | Potato | nucleus | 68.53 | 68.06 |
| Solyc11g006690.1.1 | Tomato | nucleus | 68.53 | 68.06 |
| PGSC0003DMT400060127 | Potato | extracellular | 67.83 | 67.36 |
| Solyc05g055230.1.1 | Tomato | nucleus | 67.83 | 67.36 |
| GSMUA_Achr4P29180_001 | Banana | mitochondrion | 69.93 | 59.52 |
| Bra028778.1-P | Field mustard | cytosol | 69.93 | 55.87 |
| KRH30810 | Soybean | cytosol, endoplasmic reticulum | 34.27 | 55.68 |
| CDY14138 | Canola | nucleus | 69.23 | 53.51 |
Protein Annotations
| Gene3D:1.10.60.20 | MapMan:17.1.3.1.19 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR036401 | HAMAP:MF_00511 |
| PFAM:PF00833 | PANTHER:PTHR10732 | PANTHER:PTHR10732:SF2 | InterPro:RPS17e-like_sf | InterPro:Ribosomal_S17e | SUPFAM:SSF116820 |
| EnsemblPlantsGene:TraesCS1B01G174800 | EnsemblPlants:TraesCS1B01G174800.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:315383363..315383794
Molecular Weight (calculated)
16493.1 Da
IEP (calculated)
10.881
GRAVY (calculated)
-0.722
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVRTKTVK KTSRQVIEKY YSRMTLDFHT NKKVLEEVSI LQSKRLRNKV AGFTTHLMRR IQRGPVRGIS LKLQEEERER RMDFVPEKSA LEVDEIRVDK
101: ETMDMLAFLG MADLPGVERA PEVTSSAAPY RQPFNGPRGG NRA
101: ETMDMLAFLG MADLPGVERA PEVTSSAAPY RQPFNGPRGG NRA
001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y
Arabidopsis Description
RPS17D40S ribosomal protein S17-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.