CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY36901
CDY44976
CDY58069
CDY58070
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04390.1	CDY36901	AT3G48150.1	21798944
AT2G04390.1	CDY44976	AT3G48150.1	21798944
AT2G04390.1	CDY58069	AT3G48150.1	21798944
AT2G04390.1	CDY58070	AT3G48150.1	21798944
AT2G04390.1	CDY70805	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04927	Canola	cytosol	69.73	94.85
CDX70203	Canola	cytosol	67.03	91.18
CDY44878	Canola	cytosol	67.03	91.18
CDY11309	Canola	cytosol	64.86	88.89
CDY47259	Canola	cytosol	65.41	88.32
AT5G04800.2	Thale cress	cytosol	67.03	87.94
AT2G04390.1	Thale cress	cytosol	67.03	87.94
AT2G05220.1	Thale cress	cytosol	66.49	87.86
CDX80997	Canola	cytosol	64.86	87.59
CDY00960	Canola	cytosol	65.41	87.05
KRH32794	Soybean	cytosol	63.24	84.17
CDY19565	Canola	cytosol	51.35	84.07
CDY25845	Canola	cytosol	51.35	84.07
CDY48004	Canola	cytosol	51.35	84.07
KRG89343	Soybean	nucleus	60.54	82.96
KRH72240	Soybean	endoplasmic reticulum	62.7	82.86
KRH50389	Soybean	cytosol	57.3	82.81
Solyc11g006690.1.1	Tomato	nucleus	62.7	80.56
Solyc05g055230.1.1	Tomato	nucleus	62.7	80.56
VIT_08s0007g02620.t01	Wine grape	cytosol	61.08	80.14
PGSC0003DMT400072583	Potato	cytosol	60.54	74.17
Zm00001d045000_P001	Maize	mitochondrion	56.22	73.24
EER88019	Sorghum	cytosol	55.68	72.54
Zm00001d037111_P001	Maize	plastid	55.14	71.83
Os10t0411800-01	Rice	nucleus	54.59	71.63
Os03t0109500-00	Rice	plasma membrane	55.14	70.83
TraesCS1A01G159100.1	Wheat	nucleus	54.05	69.93
TraesCS1D01G156400.2	Wheat	golgi	54.05	69.93
TraesCS1B01G174800.1	Wheat	golgi, unclear	53.51	69.23
GSMUA_Achr5P10190_001	Banana	cytosol	17.84	68.75
KRH30810	Soybean	cytosol, endoplasmic reticulum	31.35	65.91
HORVU1Hr1G042220.1	Barley	nucleus	53.51	56.25

Protein Annotations

Gene3D:1.10.60.20	MapMan:17.1.3.1.19	GO:A0A078FP85	UniProt:A0A078FP85	EnsemblPlants:CDY14138	ProteinID:CDY14138
ProteinID:CDY14138.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00078684001	InterPro:IPR036401	HAMAP:MF_00511
PFAM:PF00833	ScanProsite:PS00712	PANTHER:PTHR10732	PANTHER:PTHR10732:SF2	InterPro:RPS17e-like_sf	InterPro:Ribosomal_S17e
InterPro:Ribosomal_S17e_CS	SUPFAM:SSF116820	UniParc:UPI0004EF0824	SEG:seg	:	:

Description

BnaC02g02550DBnaC02g02550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FP85]

Coordinates

chrLK032040:-:587150..588402

Molecular Weight (calculated)

21006.2 Da

IEP (calculated)

9.118

GRAVY (calculated)

-0.613

Length

185 amino acids

Sequence
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDVPGVSVV EPQAVAPAFG RPPRSAVHWS KCVCKIEGSG GTLQKTFALD WSSHNHHRSY LDQVSDVDPE EDVDE

Best Arabidopsis Sequence Match ( AT5G04800.1 )
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y

Arabidopsis Description

RPS17D40S ribosomal protein S17-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.