Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- peroxisome 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| golgi:
25769308
nucleus: 26228564 |
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G251400.1 | |
| TraesCS6B01G273900.1 | |
| TraesCS6D01G233200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G04390.1 | TraesCS6A01G251400.1 | AT3G48150.1 | 21798944 |
| AT2G04390.1 | TraesCS6B01G273900.1 | AT3G48150.1 | 21798944 |
| AT2G04390.1 | TraesCS6D01G233200.1 | AT3G48150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G156400.2 | Wheat | golgi | 99.3 | 99.3 |
| TraesCS1B01G174800.1 | Wheat | golgi, unclear | 98.6 | 98.6 |
| Zm00001d037111_P001 | Maize | plastid | 85.31 | 85.92 |
| EER88019 | Sorghum | cytosol | 85.31 | 85.92 |
| Zm00001d045000_P001 | Maize | mitochondrion | 84.62 | 85.21 |
| Os10t0411800-01 | Rice | nucleus | 83.92 | 85.11 |
| HORVU1Hr1G042220.1 | Barley | nucleus | 96.5 | 78.41 |
| GSMUA_Achr11P... | Banana | cytosol | 74.13 | 75.18 |
| GSMUA_Achr8P12400_001 | Banana | cytosol | 74.13 | 74.65 |
| CDX80997 | Canola | cytosol | 70.63 | 73.72 |
| CDY47259 | Canola | cytosol | 70.63 | 73.72 |
| CDX70203 | Canola | cytosol | 69.93 | 73.53 |
| CDY04927 | Canola | cytosol | 69.93 | 73.53 |
| Bra009431.1-P | Field mustard | cytosol | 69.93 | 73.53 |
| CDY44878 | Canola | cytosol | 69.93 | 73.53 |
| KRH50389 | Soybean | cytosol | 65.73 | 73.44 |
| VIT_08s0007g02620.t01 | Wine grape | cytosol | 72.03 | 73.05 |
| Bra005887.1-P | Field mustard | cytosol | 69.93 | 72.99 |
| KRH32794 | Soybean | cytosol | 69.93 | 71.94 |
| GSMUA_Achr1P00810_001 | Banana | nucleus | 72.73 | 71.72 |
| AT2G04390.1 | Thale cress | cytosol | 70.63 | 71.63 |
| AT5G04800.2 | Thale cress | cytosol | 70.63 | 71.63 |
| AT2G05220.1 | Thale cress | cytosol | 69.93 | 71.43 |
| KRG89343 | Soybean | nucleus | 67.13 | 71.11 |
| VIT_13s0073g00120.t01 | Wine grape | cytosol | 71.33 | 70.83 |
| CDY48004 | Canola | cytosol | 55.94 | 70.8 |
| Bra002983.1-P | Field mustard | cytosol | 55.94 | 70.8 |
| CDY19565 | Canola | cytosol | 55.94 | 70.8 |
| CDY25845 | Canola | cytosol | 55.94 | 70.8 |
| KRH72240 | Soybean | endoplasmic reticulum | 69.23 | 70.71 |
| CDY11309 | Canola | cytosol | 66.43 | 70.37 |
| Bra005820.1-P | Field mustard | cytosol | 66.43 | 70.37 |
| AT3G10610.1 | Thale cress | cytosol | 67.83 | 69.29 |
| CDY00960 | Canola | cytosol | 67.13 | 69.06 |
| PGSC0003DMT400019655 | Potato | nucleus | 69.23 | 68.75 |
| Solyc11g006690.1.1 | Tomato | nucleus | 69.23 | 68.75 |
| PGSC0003DMT400060127 | Potato | extracellular | 68.53 | 68.06 |
| Solyc05g055230.1.1 | Tomato | nucleus | 68.53 | 68.06 |
| GSMUA_Achr4P29180_001 | Banana | mitochondrion | 70.63 | 60.12 |
| Bra028778.1-P | Field mustard | cytosol | 69.93 | 55.87 |
| KRH30810 | Soybean | cytosol, endoplasmic reticulum | 33.57 | 54.55 |
| CDY14138 | Canola | nucleus | 69.93 | 54.05 |
Protein Annotations
| Gene3D:1.10.60.20 | MapMan:17.1.3.1.19 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR036401 | HAMAP:MF_00511 |
| PFAM:PF00833 | PANTHER:PTHR10732 | PANTHER:PTHR10732:SF2 | InterPro:RPS17e-like_sf | InterPro:Ribosomal_S17e | SUPFAM:SSF116820 |
| EnsemblPlantsGene:TraesCS1A01G159100 | EnsemblPlants:TraesCS1A01G159100.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:284336841..284337272
Molecular Weight (calculated)
16449.0 Da
IEP (calculated)
10.881
GRAVY (calculated)
-0.721
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVRTKTVK KTSRQVIEKY YSRMTLDFHT NKKVLEEVSI LQSKRLRNKV AGFTTHLMRR IQRGPVRGIS LKLQEEERER RMDFVPEKSA LEVDEIRVDK
101: ETMDMLAFLG MADLPGVERA PEATSAAAPY RQPFNGPRGG NRA
101: ETMDMLAFLG MADLPGVERA PEATSAAAPY RQPFNGPRGG NRA
001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y
Arabidopsis Description
RPS17D40S ribosomal protein S17-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.