Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47259 | Canola | cytosol | 98.54 | 98.54 |
| CDY04927 | Canola | cytosol | 86.86 | 87.5 |
| CDX70203 | Canola | cytosol | 86.13 | 86.76 |
| CDY44878 | Canola | cytosol | 86.13 | 86.76 |
| CDY11309 | Canola | cytosol | 84.67 | 85.93 |
| CDY00960 | Canola | cytosol | 86.13 | 84.89 |
| KRH32794 | Soybean | cytosol | 86.13 | 84.89 |
| KRH50389 | Soybean | cytosol | 78.83 | 84.38 |
| KRH72240 | Soybean | endoplasmic reticulum | 85.4 | 83.57 |
| KRG89343 | Soybean | nucleus | 81.75 | 82.96 |
| CDY48004 | Canola | cytosol | 67.88 | 82.3 |
| CDY25845 | Canola | cytosol | 67.88 | 82.3 |
| CDY19565 | Canola | cytosol | 67.88 | 82.3 |
| VIT_08s0007g02620.t01 | Wine grape | cytosol | 84.67 | 82.27 |
| Solyc11g006690.1.1 | Tomato | nucleus | 86.13 | 81.94 |
| Solyc05g055230.1.1 | Tomato | nucleus | 85.4 | 81.25 |
| Os03t0109500-00 | Rice | plasma membrane | 78.1 | 74.31 |
| PGSC0003DMT400072583 | Potato | cytosol | 81.75 | 74.17 |
| Zm00001d045000_P001 | Maize | mitochondrion | 76.64 | 73.94 |
| EER88019 | Sorghum | cytosol | 75.91 | 73.24 |
| Os10t0411800-01 | Rice | nucleus | 75.18 | 73.05 |
| Zm00001d037111_P001 | Maize | plastid | 75.18 | 72.54 |
| TraesCS1A01G159100.1 | Wheat | nucleus | 73.72 | 70.63 |
| TraesCS1B01G174800.1 | Wheat | golgi, unclear | 73.72 | 70.63 |
| TraesCS1D01G156400.2 | Wheat | golgi | 73.72 | 70.63 |
| GSMUA_Achr5P10190_001 | Banana | cytosol | 24.09 | 68.75 |
| KRH30810 | Soybean | cytosol, endoplasmic reticulum | 43.8 | 68.18 |
| CDY14138 | Canola | nucleus | 87.59 | 64.86 |
| HORVU1Hr1G042220.1 | Barley | nucleus | 73.72 | 57.39 |
Protein Annotations
| Gene3D:1.10.60.20 | MapMan:17.1.3.1.19 | GO:A0A078CW76 | EnsemblPlants:CDX80997 | ProteinID:CDX80997 | ProteinID:CDX80997.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00134428001 | InterPro:IPR036401 | HAMAP:MF_00511 | PFAM:PF00833 |
| ScanProsite:PS00712 | PANTHER:PTHR10732 | PANTHER:PTHR10732:SF2 | InterPro:RPS17e-like_sf | InterPro:Ribosomal_S17e | InterPro:Ribosomal_S17e_CS |
| SUPFAM:SSF116820 | UniParc:UPI0004EE277D | : | : | : | : |
Description
BnaC03g02510D
Coordinates
chrLK031823:+:1210024..1210568
Molecular Weight (calculated)
15660.3 Da
IEP (calculated)
10.973
GRAVY (calculated)
-0.530
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMRR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDRIEVDK
101: ETLDMLASLG MGDMPGVVKV EPVSAAPIAG FGRGRRF
101: ETLDMLASLG MGDMPGVVKV EPVSAAPIAG FGRGRRF
001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTSGISAV EPQQAMAPIA AFGGRAPRRY
101: ETLEMLASLG MSDTSGISAV EPQQAMAPIA AFGGRAPRRY
Arabidopsis Description
RPS17B40S ribosomal protein S17-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ36]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.