CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY36901
CDY44976
CDY58069
CDY58070
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04390.1	CDY36901	AT3G48150.1	21798944
AT2G04390.1	CDY44976	AT3G48150.1	21798944
AT2G04390.1	CDY58069	AT3G48150.1	21798944
AT2G04390.1	CDY58070	AT3G48150.1	21798944
AT2G04390.1	CDY70805	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005820.1-P	Field mustard	cytosol	100.0	100.0
CDX70203	Canola	cytosol	92.59	91.91
CDY44878	Canola	cytosol	92.59	91.91
AT2G05220.1	Thale cress	cytosol	92.59	89.29
CDY04927	Canola	cytosol	89.63	88.97
CDY00960	Canola	cytosol	91.11	88.49
AT5G04800.2	Thale cress	cytosol	91.85	87.94
AT2G04390.1	Thale cress	cytosol	91.11	87.23
CDY47259	Canola	cytosol	86.67	85.4
CDY19565	Canola	cytosol	71.11	84.96
CDY25845	Canola	cytosol	71.11	84.96
CDY48004	Canola	cytosol	71.11	84.96
CDX80997	Canola	cytosol	85.93	84.67
KRH50389	Soybean	cytosol	78.52	82.81
KRG89343	Soybean	nucleus	80.74	80.74
KRH72240	Soybean	endoplasmic reticulum	82.96	80.0
KRH32794	Soybean	cytosol	81.48	79.14
VIT_08s0007g02620.t01	Wine grape	cytosol	80.0	76.6
Solyc11g006690.1.1	Tomato	nucleus	80.0	75.0
Solyc05g055230.1.1	Tomato	nucleus	80.0	75.0
Os10t0411800-01	Rice	nucleus	75.56	72.34
PGSC0003DMT400072583	Potato	cytosol	77.78	69.54
Os03t0109500-00	Rice	plasma membrane	74.07	69.44
GSMUA_Achr5P10190_001	Banana	cytosol	24.44	68.75
Zm00001d045000_P001	Maize	mitochondrion	71.85	68.31
EER88019	Sorghum	cytosol	71.11	67.61
Zm00001d037111_P001	Maize	plastid	71.11	67.61
TraesCS1A01G159100.1	Wheat	nucleus	70.37	66.43
TraesCS1B01G174800.1	Wheat	golgi, unclear	70.37	66.43
TraesCS1D01G156400.2	Wheat	golgi	70.37	66.43
CDY14138	Canola	nucleus	88.89	64.86
KRH30810	Soybean	cytosol, endoplasmic reticulum	41.48	63.64
HORVU1Hr1G042220.1	Barley	nucleus	71.11	54.55

Protein Annotations

Gene3D:1.10.60.20	MapMan:17.1.3.1.19	GO:A0A078FED6	UniProt:A0A078FED6	EnsemblPlants:CDY11309	ProteinID:CDY11309
ProteinID:CDY11309.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00049351001	InterPro:IPR036401	HAMAP:MF_00511
PFAM:PF00833	ScanProsite:PS00712	PANTHER:PTHR10732	PANTHER:PTHR10732:SF2	InterPro:RPS17e-like_sf	InterPro:Ribosomal_S17e
InterPro:Ribosomal_S17e_CS	SUPFAM:SSF116820	UniParc:UPI000253FBFB	:	:	:

Description

BnaA03g01450DBnaA03g01450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FED6]

Coordinates

chrLK032010:+:663486..664429

Molecular Weight (calculated)

15550.0 Da

IEP (calculated)

10.807

GRAVY (calculated)

-0.644

Length

135 amino acids

Sequence
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDVIKVDK
101: ETLEMLASLG MSDTSGISEV EPQAAPTFSR PPRRF

Best Arabidopsis Sequence Match ( AT2G05220.2 )
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTSGISAV EPQQAMAPIA AFGGRAPRRY

Arabidopsis Description

RPS17B40S ribosomal protein S17-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ36]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.