Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G04390.1 | CDY36901 | AT3G48150.1 | 21798944 |
| AT2G04390.1 | CDY44976 | AT3G48150.1 | 21798944 |
| AT2G04390.1 | CDY58069 | AT3G48150.1 | 21798944 |
| AT2G04390.1 | CDY58070 | AT3G48150.1 | 21798944 |
| AT2G04390.1 | CDY70805 | AT3G48150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009431.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY44878 | Canola | cytosol | 100.0 | 100.0 |
| CDY11309 | Canola | cytosol | 91.91 | 92.59 |
| CDY04927 | Canola | cytosol | 88.24 | 88.24 |
| CDY00960 | Canola | cytosol | 88.97 | 87.05 |
| CDY47259 | Canola | cytosol | 87.5 | 86.86 |
| AT5G04800.2 | Thale cress | cytosol | 89.71 | 86.52 |
| AT2G05220.1 | Thale cress | cytosol | 88.97 | 86.43 |
| CDX80997 | Canola | cytosol | 86.76 | 86.13 |
| AT2G04390.1 | Thale cress | cytosol | 88.97 | 85.82 |
| CDY25845 | Canola | cytosol | 70.59 | 84.96 |
| CDY48004 | Canola | cytosol | 70.59 | 84.96 |
| CDY19565 | Canola | cytosol | 70.59 | 84.96 |
| KRH50389 | Soybean | cytosol | 77.94 | 82.81 |
| KRG89343 | Soybean | nucleus | 80.88 | 81.48 |
| KRH72240 | Soybean | endoplasmic reticulum | 81.62 | 79.29 |
| KRH32794 | Soybean | cytosol | 80.88 | 79.14 |
| VIT_08s0007g02620.t01 | Wine grape | cytosol | 79.41 | 76.6 |
| Solyc11g006690.1.1 | Tomato | nucleus | 80.88 | 76.39 |
| Solyc05g055230.1.1 | Tomato | nucleus | 80.88 | 76.39 |
| Zm00001d045000_P001 | Maize | mitochondrion | 75.74 | 72.54 |
| EER88019 | Sorghum | cytosol | 75.0 | 71.83 |
| Zm00001d037111_P001 | Maize | plastid | 74.26 | 71.13 |
| PGSC0003DMT400072583 | Potato | cytosol | 78.68 | 70.86 |
| Os03t0109500-00 | Rice | plasma membrane | 75.0 | 70.83 |
| Os10t0411800-01 | Rice | nucleus | 72.79 | 70.21 |
| TraesCS1A01G159100.1 | Wheat | nucleus | 73.53 | 69.93 |
| TraesCS1D01G156400.2 | Wheat | golgi | 73.53 | 69.93 |
| TraesCS1B01G174800.1 | Wheat | golgi, unclear | 72.79 | 69.23 |
| GSMUA_Achr5P10190_001 | Banana | cytosol | 24.26 | 68.75 |
| CDY14138 | Canola | nucleus | 91.18 | 67.03 |
| KRH30810 | Soybean | cytosol, endoplasmic reticulum | 41.18 | 63.64 |
| HORVU1Hr1G042220.1 | Barley | nucleus | 72.79 | 56.25 |
Protein Annotations
| Gene3D:1.10.60.20 | MapMan:17.1.3.1.19 | GO:A0A078I6W6 | UniProt:A0A078I6W6 | EnsemblPlants:CDX70203 | ProteinID:CDX70203 |
| ProteinID:CDX70203.1 | ProteinID:CDY44878.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00136326001 | InterPro:IPR036401 |
| HAMAP:MF_00511 | PFAM:PF00833 | ScanProsite:PS00712 | PANTHER:PTHR10732 | PANTHER:PTHR10732:SF2 | InterPro:RPS17e-like_sf |
| InterPro:Ribosomal_S17e | InterPro:Ribosomal_S17e_CS | SUPFAM:SSF116820 | UniParc:UPI0001B8377C | SEG:seg | : |
Description
BnaA10g25520DBnaC09g50780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I6W6]
Coordinates
chrLK031790:-:3544658..3545698
Molecular Weight (calculated)
15619.1 Da
IEP (calculated)
10.807
GRAVY (calculated)
-0.622
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDVIKVDK
101: ETLEMLASLG MADTPGFSEV ETQAPAPAFG RPPRRF
101: ETLEMLASLG MADTPGFSEV ETQAPAPAFG RPPRRF
001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y
Arabidopsis Description
RPS17D40S ribosomal protein S17-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.