Factsheet for Solyc11g006690.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113740.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04390.1	Solyc03g113740.2.1	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019655	Potato	nucleus	98.61	98.61
Solyc05g055230.1.1	Tomato	nucleus	97.92	97.92
CDY47259	Canola	cytosol	83.33	87.59
Bra005887.1-P	Field mustard	cytosol	82.64	86.86
CDX80997	Canola	cytosol	81.94	86.13
VIT_13s0073g00120.t01	Wine grape	cytosol	85.42	85.42
KRH50389	Soybean	cytosol	75.69	85.16
CDY04927	Canola	cytosol	79.86	84.56
KRH32794	Soybean	cytosol	81.25	84.17
KRH72240	Soybean	endoplasmic reticulum	81.25	83.57
KRG89343	Soybean	nucleus	77.08	82.22
CDY19565	Canola	cytosol	63.89	81.42
CDY25845	Canola	cytosol	63.89	81.42
Bra002983.1-P	Field mustard	cytosol	63.89	81.42
CDY48004	Canola	cytosol	63.89	81.42
CDY00960	Canola	cytosol	78.47	81.3
CDX70203	Canola	cytosol	76.39	80.88
Bra009431.1-P	Field mustard	cytosol	76.39	80.88
CDY44878	Canola	cytosol	76.39	80.88
VIT_08s0007g02620.t01	Wine grape	cytosol	79.17	80.85
GSMUA_Achr11P...	Banana	cytosol	79.17	80.85
AT2G04390.1	Thale cress	cytosol	79.17	80.85
AT5G04800.2	Thale cress	cytosol	78.47	80.14
AT2G05220.1	Thale cress	cytosol	77.78	80.0
Bra005820.1-P	Field mustard	cytosol	75.0	80.0
CDY11309	Canola	cytosol	75.0	80.0
AT3G10610.1	Thale cress	cytosol	76.39	78.57
GSMUA_Achr8P12400_001	Banana	cytosol	77.08	78.17
GSMUA_Achr1P00810_001	Banana	nucleus	78.47	77.93
Os03t0109500-00	Rice	plasma membrane	71.53	71.53
Zm00001d045000_P001	Maize	mitochondrion	70.14	71.13
EER88019	Sorghum	cytosol	68.75	69.72
Zm00001d037111_P001	Maize	plastid	68.75	69.72
Os10t0411800-01	Rice	nucleus	68.06	69.5
TraesCS1A01G159100.1	Wheat	nucleus	68.75	69.23
TraesCS1D01G156400.2	Wheat	golgi	68.75	69.23
TraesCS1B01G174800.1	Wheat	golgi, unclear	68.06	68.53
GSMUA_Achr4P29180_001	Banana	mitochondrion	77.08	66.07
KRH30810	Soybean	cytosol, endoplasmic reticulum	39.58	64.77
Bra028778.1-P	Field mustard	cytosol	79.17	63.69
CDY14138	Canola	nucleus	80.56	62.7
HORVU1Hr1G042220.1	Barley	nucleus	67.36	55.11

Protein Annotations

Gene3D:1.10.60.20	MapMan:17.1.3.1.19	GO:GO:0000028	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	InterPro:IPR036401	UniProt:K4D4T0	HAMAP:MF_00511
PFAM:PF00833	ScanProsite:PS00712	PANTHER:PTHR10732	PANTHER:PTHR10732:SF2	InterPro:RPS17e-like_sf	InterPro:Ribosomal_S17e
InterPro:Ribosomal_S17e_CS	SUPFAM:SSF116820	EnsemblPlantsGene:Solyc11g006690.1	EnsemblPlants:Solyc11g006690.1.1	UniParc:UPI0002769F49	:

Description

No Description!

Coordinates

chr11:-:1295503..1295937

Molecular Weight (calculated)

16234.9 Da

IEP (calculated)

10.677

GRAVY (calculated)

-0.487

Length

144 amino acids

Sequence
(BLAST)

001: MGRVRTKTVK KSSRQVIERY YSKMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDLIEVDK
101: ETLDMLSALG MSDLPGVVKQ AAEPQAVAAL PTFGRGAGGF GRKY

Best Arabidopsis Sequence Match ( AT5G04800.1 )
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y

Arabidopsis Description

RPS17D40S ribosomal protein S17-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.