Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P12400_001 | Banana | cytosol | 90.78 | 90.14 |
| GSMUA_Achr1P00810_001 | Banana | nucleus | 85.82 | 83.45 |
| PGSC0003DMT400019655 | Potato | nucleus | 80.85 | 79.17 |
| Solyc11g006690.1.1 | Tomato | nucleus | 80.85 | 79.17 |
| Solyc05g055230.1.1 | Tomato | nucleus | 80.85 | 79.17 |
| PGSC0003DMT400060127 | Potato | extracellular | 80.85 | 79.17 |
| Os03t0109500-00 | Rice | plasma membrane | 78.01 | 76.39 |
| Os10t0411800-01 | Rice | nucleus | 75.18 | 75.18 |
| TraesCS1A01G159100.1 | Wheat | nucleus | 75.18 | 74.13 |
| Zm00001d045000_P001 | Maize | mitochondrion | 74.47 | 73.94 |
| TraesCS1B01G174800.1 | Wheat | golgi, unclear | 74.47 | 73.43 |
| TraesCS1D01G156400.2 | Wheat | golgi | 74.47 | 73.43 |
| EER88019 | Sorghum | cytosol | 73.76 | 73.24 |
| Zm00001d037111_P001 | Maize | plastid | 73.76 | 73.24 |
| GSMUA_Achr5P10190_001 | Banana | cytosol | 24.11 | 70.83 |
| GSMUA_Achr4P29180_001 | Banana | mitochondrion | 82.98 | 69.64 |
| HORVU1Hr1G042220.1 | Barley | nucleus | 75.18 | 60.23 |
Protein Annotations
| Gene3D:1.10.60.20 | MapMan:17.1.3.1.19 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr11G02700_001 | EnsemblPlants:GSMUA_Achr11P02700_001 |
| EnsemblPlants:GSMUA_Achr11T02700_001 | InterPro:IPR036401 | UniProt:M0RNV0 | HAMAP:MF_00511 | PFAM:PF00833 | ScanProsite:PS00712 |
| PANTHER:PTHR10732 | PANTHER:PTHR10732:SF2 | InterPro:RPS17e-like_sf | InterPro:Ribosomal_S17e | InterPro:Ribosomal_S17e_CS | SUPFAM:SSF116820 |
| UniParc:UPI0002950F09 | SEG:seg | : | : | : | : |
Description
40S ribosomal protein S17 [Source:GMGC_GENE;Acc:GSMUA_Achr11G02700_001]
Coordinates
chr11:-:1883271..1883923
Molecular Weight (calculated)
16039.6 Da
IEP (calculated)
10.781
GRAVY (calculated)
-0.653
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVRTKTVK KSSRQVIERY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMRR IQRGPVRGIS LKLQEEERER RMDFVPDESA IKVDQIVVDK
101: ETIDMLGTLG MADLPGVEKQ PDAPAGTGYP TRPGGYGGRR I
101: ETIDMLGTLG MADLPGVEKQ PDAPAGTGYP TRPGGYGGRR I
001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKIDDVKVDK
101: ETLEMLASLG MSDIAGISQV ETQQAMAPAV FGRPAGRYQR
101: ETLEMLASLG MSDIAGISQV ETQQAMAPAV FGRPAGRYQR
Arabidopsis Description
RPS17C40S ribosomal protein S17-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQZ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.