CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES07517

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04390.1	EES07517	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045000_P001	Maize	mitochondrion	98.59	98.59
Zm00001d037111_P001	Maize	plastid	97.89	97.89
Os10t0411800-01	Rice	nucleus	93.66	94.33
TraesCS1D01G156400.2	Wheat	golgi	85.92	85.31
TraesCS1B01G174800.1	Wheat	golgi, unclear	85.92	85.31
TraesCS1A01G159100.1	Wheat	nucleus	85.92	85.31
CDX80997	Canola	cytosol	73.24	75.91
CDY47259	Canola	cytosol	73.24	75.91
Bra005887.1-P	Field mustard	cytosol	72.54	75.18
Bra009431.1-P	Field mustard	cytosol	71.83	75.0
CDX70203	Canola	cytosol	71.83	75.0
CDY44878	Canola	cytosol	71.83	75.0
CDY04927	Canola	cytosol	71.13	74.26
GSMUA_Achr11P...	Banana	cytosol	73.24	73.76
GSMUA_Achr1P00810_001	Banana	nucleus	74.65	73.1
KRH50389	Soybean	cytosol	65.49	72.66
KRH32794	Soybean	cytosol	70.42	71.94
VIT_08s0007g02620.t01	Wine grape	cytosol	71.13	71.63
GSMUA_Achr8P12400_001	Banana	cytosol	71.13	71.13
CDY11309	Canola	cytosol	67.61	71.11
Bra005820.1-P	Field mustard	cytosol	67.61	71.11
AT5G04800.2	Thale cress	cytosol	70.42	70.92
AT2G04390.1	Thale cress	cytosol	70.42	70.92
CDY25845	Canola	cytosol	56.34	70.8
Bra002983.1-P	Field mustard	cytosol	56.34	70.8
CDY19565	Canola	cytosol	56.34	70.8
CDY48004	Canola	cytosol	56.34	70.8
KRH72240	Soybean	endoplasmic reticulum	69.72	70.71
KRG89343	Soybean	nucleus	66.9	70.37
VIT_13s0073g00120.t01	Wine grape	cytosol	71.13	70.14
AT2G05220.1	Thale cress	cytosol	69.01	70.0
HORVU1Hr1G042220.1	Barley	nucleus	86.62	69.89
Solyc05g055230.1.1	Tomato	nucleus	70.42	69.44
PGSC0003DMT400060127	Potato	extracellular	70.42	69.44
AT3G10610.1	Thale cress	cytosol	68.31	69.29
CDY00960	Canola	cytosol	67.61	69.06
Solyc11g006690.1.1	Tomato	nucleus	69.72	68.75
PGSC0003DMT400019655	Potato	nucleus	69.01	68.06
GSMUA_Achr4P29180_001	Banana	mitochondrion	74.65	63.1
Bra028778.1-P	Field mustard	cytosol	70.42	55.87
CDY14138	Canola	nucleus	72.54	55.68
KRH30810	Soybean	cytosol, endoplasmic reticulum	33.8	54.55

Protein Annotations

Gene3D:1.10.60.20	MapMan:17.1.3.1.19	EntrezGene:8077316	UniProt:C5Z622	EnsemblPlants:EER88019	ProteinID:EER88019
ProteinID:EER88019.1	GO:GO:0000028	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0022627	InterPro:IPR036401	HAMAP:MF_00511	PFAM:PF00833	PANTHER:PTHR10732	PANTHER:PTHR10732:SF2
InterPro:RPS17e-like_sf	InterPro:Ribosomal_S17e	EnsemblPlantsGene:SORBI_3010G076400	SUPFAM:SSF116820	unigene:Sbi.18019	UniParc:UPI0001A89278
RefSeq:XP_002436652.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:6283502..6284340

Molecular Weight (calculated)

16515.2 Da

IEP (calculated)

10.776

GRAVY (calculated)

-0.805

Length

142 amino acids

Sequence
(BLAST)

001: MGRVRTKTVK KTSRQVIEKY YSRMTLDFHT NKKVLEEVSI LPSKRLRNKV AGFTTHLMRR IQRGPVRGIS LKLQEEERER RMDFVPEKSA LEVEEIRVDK
101: ETMEMLAALG MADLPGVERQ QEVSNAPAYG RPQYGGPRRD RV

Best Arabidopsis Sequence Match ( AT5G04800.1 )
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y

Arabidopsis Description

RPS17D40S ribosomal protein S17-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.