CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY36901
CDY44976
CDY58069
CDY58070
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04390.1	CDY36901	AT3G48150.1	21798944
AT2G04390.1	CDY44976	AT3G48150.1	21798944
AT2G04390.1	CDY58069	AT3G48150.1	21798944
AT2G04390.1	CDY58070	AT3G48150.1	21798944
AT2G04390.1	CDY70805	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48004	Canola	cytosol	100.0	100.0
Bra002983.1-P	Field mustard	cytosol	100.0	100.0
CDY25845	Canola	cytosol	100.0	100.0
CDY11309	Canola	cytosol	84.96	71.11
CDX70203	Canola	cytosol	84.96	70.59
CDY44878	Canola	cytosol	84.96	70.59
CDY04927	Canola	cytosol	84.07	69.85
KRH50389	Soybean	cytosol	78.76	69.53
CDY47259	Canola	cytosol	83.19	68.61
CDX80997	Canola	cytosol	82.3	67.88
AT2G05220.1	Thale cress	cytosol	84.07	67.86
CDY00960	Canola	cytosol	83.19	67.63
AT2G04390.1	Thale cress	cytosol	84.07	67.38
AT5G04800.2	Thale cress	cytosol	84.07	67.38
KRG89343	Soybean	nucleus	79.65	66.67
KRH32794	Soybean	cytosol	79.65	64.75
KRH72240	Soybean	endoplasmic reticulum	79.65	64.29
Solyc11g006690.1.1	Tomato	nucleus	81.42	63.89
Solyc05g055230.1.1	Tomato	nucleus	81.42	63.89
VIT_08s0007g02620.t01	Wine grape	cytosol	79.65	63.83
GSMUA_Achr5P10190_001	Banana	cytosol	26.55	62.5
PGSC0003DMT400072583	Potato	cytosol	79.65	59.6
Os03t0109500-00	Rice	plasma membrane	73.45	57.64
Zm00001d045000_P001	Maize	mitochondrion	71.68	57.04
Os10t0411800-01	Rice	nucleus	70.8	56.74
EER88019	Sorghum	cytosol	70.8	56.34
Zm00001d037111_P001	Maize	plastid	70.8	56.34
TraesCS1A01G159100.1	Wheat	nucleus	70.8	55.94
TraesCS1B01G174800.1	Wheat	golgi, unclear	70.8	55.94
TraesCS1D01G156400.2	Wheat	golgi	70.8	55.94
CDY14138	Canola	nucleus	84.07	51.35
KRH30810	Soybean	cytosol, endoplasmic reticulum	38.05	48.86
HORVU1Hr1G042220.1	Barley	nucleus	70.8	45.45

Protein Annotations

Gene3D:1.10.60.20	MapMan:17.1.3.1.19	GO:A0A078FZ01	UniProt:A0A078FZ01	EnsemblPlants:CDY19565	ProteinID:CDY19565
ProteinID:CDY19565.1	ProteinID:CDY25845.1	ProteinID:CDY48004.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00009215001
InterPro:IPR036401	HAMAP:MF_00511	PFAM:PF00833	ScanProsite:PS00712	PANTHER:PTHR10732	PANTHER:PTHR10732:SF2
InterPro:RPS17e-like_sf	InterPro:Ribosomal_S17e	InterPro:Ribosomal_S17e_CS	SUPFAM:SSF116820	UniParc:UPI00025440A6	:

Description

BnaA05g19730DBnaA04g26860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZ01]

Coordinates

chrLK032098:-:24166..28571

Molecular Weight (calculated)

13327.3 Da

IEP (calculated)

9.870

GRAVY (calculated)

-0.629

Length

113 amino acids

Sequence
(BLAST)

001: MAEEDLECGR WCFVELLRTV KKSSRQVIEK YYSRMTLDFH TNKKILEEVA IIPSKRLRNK IAGFSTHLMK RIQKGPVRGI SLKLQEEERE RRMDFVPDES
101: AIKTDVIKVD KES

Best Arabidopsis Sequence Match ( AT2G05220.1 )
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTSGISAV EPQQAMAPIA AFGGRAPRRY

Arabidopsis Description

RPS17B40S ribosomal protein S17-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ36]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.