Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36901 | Canola | cytosol | 95.25 | 96.01 |
| CDY58070 | Canola | cytosol | 84.75 | 86.46 |
| CDY70805 | Canola | nucleus | 50.49 | 84.72 |
| Bra018081.1-P | Field mustard | cytosol | 93.86 | 81.87 |
| AT3G48150.1 | Thale cress | cytosol | 90.3 | 78.76 |
| VIT_07s0130g00490.t01 | Wine grape | cytosol | 74.46 | 65.16 |
| VIT_07s0031g02330.t01 | Wine grape | cytosol | 73.47 | 64.3 |
| Solyc03g113740.2.1 | Tomato | cytosol, mitochondrion | 71.68 | 62.85 |
| PGSC0003DMT400063189 | Potato | cytosol | 67.52 | 62.68 |
| CDY58069 | Canola | nucleus | 54.85 | 62.11 |
| KRH27971 | Soybean | nucleus | 70.3 | 61.53 |
| KRH77487 | Soybean | nucleus | 69.5 | 60.73 |
| KRH24006 | Soybean | cytosol | 69.7 | 59.76 |
| Os06t0679100-00 | Rice | plastid | 18.81 | 53.37 |
| EES07517 | Sorghum | cytosol | 63.17 | 53.17 |
| KRH29310 | Soybean | cytosol | 33.66 | 53.12 |
| GSMUA_Achr11P... | Banana | cytosol | 63.17 | 52.81 |
| Zm00001d017475_P002 | Maize | cytosol | 61.78 | 52.09 |
| TraesCS6A01G251400.1 | Wheat | cytosol | 61.58 | 51.92 |
| TraesCS6B01G273900.1 | Wheat | cytosol | 61.58 | 51.92 |
| TraesCS6D01G233200.1 | Wheat | cytosol | 61.39 | 51.75 |
| Os02t0656300-01 | Rice | cytosol | 60.99 | 51.59 |
| HORVU0Hr1G027080.4 | Barley | plastid | 56.63 | 47.67 |
| HORVU6Hr1G062870.1 | Barley | cytosol, plastid | 61.19 | 47.61 |
| CDX97740 | Canola | cytosol | 14.85 | 10.52 |
| CDY30158 | Canola | cytosol | 14.85 | 10.5 |
| CDY35917 | Canola | cytosol | 14.26 | 9.69 |
| CDY40468 | Canola | cytosol | 14.26 | 9.68 |
| CDY35918 | Canola | cytosol | 3.76 | 7.66 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | GO:A0A078I524 | UniProt:A0A078I524 | InterPro:APC8 | EnsemblPlants:CDY44976 |
| ProteinID:CDY44976 | ProteinID:CDY44976.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005680 | GO:GO:0007049 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030071 | EnsemblPlantsGene:GSBRNA2T00081163001 | InterPro:IPR011990 |
| InterPro:IPR013026 | InterPro:IPR019734 | PFAM:PF04049 | PFAM:PF13176 | PFAM:PF13414 | PFscan:PS50005 |
| PFscan:PS50293 | PANTHER:PTHR12558 | PANTHER:PTHR12558:SF10 | SMART:SM00028 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom |
| InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | UniPathway:UPA00143 | UniParc:UPI0004EDB369 | SEG:seg | : |
Description
BnaCnng12060DBnaCnng12060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I524]
Coordinates
chrLK032608:+:19380..21949
Molecular Weight (calculated)
58289.1 Da
IEP (calculated)
5.343
GRAVY (calculated)
-0.491
Length
505 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSKESCRNE IRAAIGQLSE RCLHSAAKWA GEQLVGIEQD PSNSTPSNTR FQRGSSSIRR RFSTNESIST PQPSVGFSQA ATPLPEEDEV IDGDLYRLAK
101: SYFNCREYRR ASHVLRDQMS KKSVFLRCYS LYLAGEKRKE EEMIELEGSL GKSDAINREL VSLERELSAL KRTGEIDSFG LYLYGVVLKE KGNETLARAS
201: LVESVNSYPW NWNAWSELQS LCTSIEILNS LNLSNHWMKE FFLASAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEDLLRN
301: DPYRVEDMDL YSNNTPAAID AYRRAVDINP CDYRAWYGLG QAYEMMGMPF YALHYFRKSI FFLPNDSRLW IAMAKCYQTE QIYMLEEAIK CYKRAVSCTD
401: TEGIALNQLA KLHQKLGRDE EAAVYFEKDV ERMDSEGLEG PNMLEALVFL ATHFKTHKKF EEAEVYCTRI LDYSGPEKEK AKSLLRGIRM EKTGFPSMDM
501: EHFPL
101: SYFNCREYRR ASHVLRDQMS KKSVFLRCYS LYLAGEKRKE EEMIELEGSL GKSDAINREL VSLERELSAL KRTGEIDSFG LYLYGVVLKE KGNETLARAS
201: LVESVNSYPW NWNAWSELQS LCTSIEILNS LNLSNHWMKE FFLASAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEDLLRN
301: DPYRVEDMDL YSNNTPAAID AYRRAVDINP CDYRAWYGLG QAYEMMGMPF YALHYFRKSI FFLPNDSRLW IAMAKCYQTE QIYMLEEAIK CYKRAVSCTD
401: TEGIALNQLA KLHQKLGRDE EAAVYFEKDV ERMDSEGLEG PNMLEALVFL ATHFKTHKKF EEAEVYCTRI LDYSGPEKEK AKSLLRGIRM EKTGFPSMDM
501: EHFPL
001: MVSKECCRNE IRAAIRQLSD RCLYSAAKWA GEQLVGIEQD PSNFTPANTR FQRGSSSIRR RFSTNESIST PLPSVGFSQA ATPLPEEDEA IDGDIYLLAK
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI
Arabidopsis Description
APC8Anaphase-promoting complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9STS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.