Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88369 | Canola | nucleus, plastid | 95.67 | 86.15 |
| CDX87519 | Canola | nucleus, plastid | 95.67 | 84.68 |
| AT1G77400.1 | Thale cress | nucleus | 79.33 | 71.12 |
| CDY38350 | Canola | cytosol | 59.13 | 69.1 |
| CDY40887 | Canola | cytosol | 58.65 | 68.54 |
| PGSC0003DMT400015482 | Potato | cytosol | 30.29 | 41.45 |
| Solyc03g113480.1.1 | Tomato | nucleus | 36.06 | 39.27 |
| PGSC0003DMT400063159 | Potato | nucleus | 35.1 | 39.04 |
| KRH64628 | Soybean | nucleus | 30.77 | 37.43 |
| VIT_18s0001g02100.t01 | Wine grape | nucleus | 29.33 | 36.97 |
| KRH53275 | Soybean | cytosol | 29.81 | 35.84 |
Protein Annotations
| EnsemblPlants:CDY41785 | EnsemblPlantsGene:GSBRNA2T00073664001 | PANTHER:PTHR35466 | PANTHER:PTHR35466:SF2 | ProteinID:CDY41785 | ProteinID:CDY41785.1 |
| SEG:seg | UniParc:UPI0004EF35B3 | UniProt:A0A078HT99 | MapMan:35.2 | : | : |
Description
BnaC02g13710DBnaC02g13710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HT99]
Coordinates
chrLK032506:+:162114..162812
Molecular Weight (calculated)
23061.3 Da
IEP (calculated)
11.831
GRAVY (calculated)
-0.723
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIVAAVDDS FKRPGSVPFS WEPPKKLSPL RLKPLSHSQP LLPPALSPPS SSFISSRSKS RSLSPLAPSF RTPSKLKPPP PSQSGLYSPA PSFRSTPRAF
101: SERWQLNRSD RVRPGSESEP RPDFGFAGLG CFPTPKFRLR KSKTGGRRKT GSRSDREYCS DMETMSPWTA SSRRSVSPRW DSPKSSFSSL RFSPRLASEA
201: EWVGFGLF
101: SERWQLNRSD RVRPGSESEP RPDFGFAGLG CFPTPKFRLR KSKTGGRRKT GSRSDREYCS DMETMSPWTA SSRRSVSPRW DSPKSSFSSL RFSPRLASEA
201: EWVGFGLF
001: MAIIDVDDSF KRPGTIPFSW EIRPGVPKTR MSQPGNTTPL QPPKKLSPLR FKPLSHSQPL LPPALSPPSS SFISNSKSRP LSPLTPHSFS TTPSKLKPPR
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF
Arabidopsis Description
At1g77400 [Source:UniProtKB/TrEMBL;Acc:Q9FVW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.