Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_16s0098g00600.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G77400.1 | VIT_16s0098g00600.t01 | AT5G24660.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400015482 | Potato | cytosol | 44.85 | 48.68 |
| KRH64628 | Soybean | nucleus | 44.24 | 42.69 |
| PGSC0003DMT400063159 | Potato | nucleus | 47.88 | 42.25 |
| KRH53275 | Soybean | cytosol | 43.64 | 41.62 |
| Solyc03g113480.1.1 | Tomato | nucleus | 47.88 | 41.36 |
| AT1G77400.1 | Thale cress | nucleus | 44.24 | 31.47 |
| CDY41785 | Canola | plastid | 36.97 | 29.33 |
| Bra008305.1-P | Field mustard | cytosol | 39.39 | 29.28 |
| CDY40887 | Canola | cytosol | 31.52 | 29.21 |
| CDX88369 | Canola | nucleus, plastid | 40.61 | 29.0 |
| CDY38350 | Canola | cytosol | 30.91 | 28.65 |
| CDX87519 | Canola | nucleus, plastid | 40.61 | 28.51 |
| Bra015670.1-P | Field mustard | cytosol, plastid | 38.79 | 13.31 |
Protein Annotations
| ArrayExpress:VIT_18s0001g02100 | EMBL:FN595227 | EnsemblPlants:VIT_18s0001g02100.t01 | EnsemblPlantsGene:VIT_18s0001g02100 | EntrezGene:104882462 | InterPro:DUF688 |
| PANTHER:PTHR35466 | PANTHER:PTHR35466:SF2 | PFAM:PF05097 | ProteinID:CCB45467 | ProteinID:CCB45467.1 | RefSeq:XP_010664180.1 |
| SEG:seg | TIGR:TC58101 | unigene:Vvi.11661 | UniParc:UPI000198534D | UniProt:F6H0J5 | MapMan:35.2 |
Description
No Description!
Coordinates
chr18:+:2504341..2505039
Molecular Weight (calculated)
18679.1 Da
IEP (calculated)
11.601
GRAVY (calculated)
-0.788
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVDESFRQP GAVPFKWEIR PGVPKVQHRH QQPGNHQRSS TNPPQKLRPP PSSPRSNFPP LPEFQTGTFR SAPRARSDRW IFDQPAVVSV GCFPAPLMSR
101: KDSKKRIVKL PEPMFNSDIE ILTRRSFSFR RAPSPFLASP SSSYSSYGSS PRPVRDSDWA GFGLF
101: KDSKKRIVKL PEPMFNSDIE ILTRRSFSFR RAPSPFLASP SSSYSSYGSS PRPVRDSDWA GFGLF
001: MAIIDVDDSF KRPGTIPFSW EIRPGVPKTR MSQPGNTTPL QPPKKLSPLR FKPLSHSQPL LPPALSPPSS SFISNSKSRP LSPLTPHSFS TTPSKLKPPR
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF
Arabidopsis Description
At1g77400 [Source:UniProtKB/TrEMBL;Acc:Q9FVW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.