Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400001476 | Potato | plastid | 45.99 | 56.25 |
| PGSC0003DMT400001475 | Potato | plastid | 48.18 | 55.93 |
| PGSC0003DMT400001474 | Potato | plastid | 47.45 | 55.56 |
| Solyc03g096760.1.1 | Tomato | plastid | 44.53 | 54.46 |
| Solyc03g096780.1.1 | Tomato | nucleus | 44.53 | 53.98 |
| Solyc03g096770.1.1 | Tomato | nucleus | 45.26 | 53.91 |
| PGSC0003DMT400069515 | Potato | cytosol | 42.34 | 51.33 |
| KRH64261 | Soybean | nucleus | 45.26 | 51.24 |
| Solyc06g072990.1.1 | Tomato | cytosol, plastid | 41.61 | 50.0 |
| KRH53667 | Soybean | cytosol, extracellular, nucleus | 43.07 | 49.17 |
| KRH16959 | Soybean | nucleus | 41.61 | 48.72 |
| Bra017974.1-P | Field mustard | cytosol | 29.2 | 46.51 |
| CDX80461 | Canola | cytosol, nucleus, plastid | 31.39 | 46.24 |
| AT3G49570.1 | Thale cress | cytosol | 32.12 | 45.36 |
| Bra009783.1-P | Field mustard | cytosol, nucleus, plastid | 30.66 | 45.16 |
| CDY69515 | Canola | cytosol, nucleus, plastid | 30.66 | 45.16 |
| AT5G24660.1 | Thale cress | cytosol, nucleus, plastid | 29.93 | 43.62 |
| AT5G24655.1 | Thale cress | cytosol | 29.2 | 43.48 |
| Bra017975.1-P | Field mustard | cytosol | 30.66 | 43.3 |
| CDY08146 | Canola | cytosol | 30.66 | 43.3 |
| CDY08148 | Canola | cytosol | 28.47 | 41.94 |
| CDY05452 | Canola | cytosol, nucleus, plastid | 29.2 | 41.24 |
| Bra020466.1-P | Field mustard | nucleus | 29.2 | 41.24 |
| AT3G49580.1 | Thale cress | cytosol, nucleus, plastid | 27.74 | 40.43 |
| CDY05402 | Canola | nucleus | 28.47 | 40.21 |
Protein Annotations
| EntrezGene:100267499 | wikigene:100267499 | MapMan:35.2 | ProteinID:CCB48115 | ProteinID:CCB48115.1 | ncoils:Coil |
| UniProt:F6H7A8 | EMBL:FN595247 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0033554 |
| EntrezGene:LOC100267499 | wikigene:LOC100267499 | PANTHER:PTHR34283 | PANTHER:PTHR34283:SF1 | UniParc:UPI0001984F38 | ArrayExpress:VIT_16s0098g00600 |
| EnsemblPlantsGene:VIT_16s0098g00600 | EnsemblPlants:VIT_16s0098g00600.t01 | RefSeq:XP_002269666 | RefSeq:XP_002269666.2 | RefSeq:XP_002269666.3 | SEG:seg |
Description
No Description!
Coordinates
chr16:+:21026820..21027406
Molecular Weight (calculated)
15903.8 Da
IEP (calculated)
7.368
GRAVY (calculated)
-1.095
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYKEAPFNA INGQRTLANY KMAPSIAVPV AQPRRPAKAA NQEQEEEKVL RRRNEELEEE LKKSQDREER MRRELERARE RLRVAEEAEE RLCSQLGELE
101: AEAVDQARQY NNRIVSLMNQ LSQAHRLIQP GPTPVPN
101: AEAVDQARQY NNRIVSLMNQ LSQAHRLIQP GPTPVPN
1: MGKGGNYVTV AASEVDELRR KNGEMEKAVE EMKKEMLQLW RRTQVAEEAE ERLCSQLAEL EAESLDQARD YHSRIIFLMN ELSRLSSDSA SASP
Arabidopsis Description
LSU2Protein RESPONSE TO LOW SULFUR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR9]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.