Factsheet for Bra009783.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001412.1-P
Bra002106.1-P
Bra004677.1-P
Bra005184.1-P
Bra005553.1-P
Bra006420.1-P
Bra010881.1-P
Bra017091.1-P
Bra024408.1-P
Bra028552.1-P
Bra030094.1-P
Bra031849.1-P
Bra032898.1-P
Bra034827.1-P
Bra036122.1-P
Bra036240.1-P
Bra038549.1-P
Bra038816.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24660.1	Bra010881.1-P	AT1G28360.1	21798944
AT5G24660.1	Bra030094.1-P	AT1G28360.1	21798944
AT5G24660.1	Bra032898.1-P	AT1G28360.1	21798944
AT5G24660.1	Bra036122.1-P	AT1G54770.1	21798944
AT5G24660.1	Bra038549.1-P	AT2G18730.1	21798944
AT5G24660.1	Bra038816.1-P	AT2G18730.1	21798944
AT5G24660.1	Bra005553.1-P	AT2G32840.1	21798944
AT5G24660.1	Bra005184.1-P	AT2G37560.1	21798944
AT5G24660.1	Bra017091.1-P	AT2G39100.1	21798944
AT5G24660.1	Bra004677.1-P	AT2G42260.1	21798944
AT5G24660.1	Bra001412.1-P	AT3G11590.1	21798944
AT5G24660.1	Bra034827.1-P	AT3G11590.1	21798944
AT5G24660.1	Bra036240.1-P	AT4G02770.1	21798944
AT5G24660.1	Bra028552.1-P	AT5G11090.1	21798944
AT5G24660.1	Bra002106.1-P	AT5G17790.1	21798944
AT5G24660.1	Bra006420.1-P	AT5G17790.1	21798944
AT5G24660.1	Bra024408.1-P	AT5G65683.1	21798944
AT5G24660.1	Bra031849.1-P	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69515	Canola	cytosol, nucleus, plastid	100.0	100.0
AT5G24660.1	Thale cress	cytosol, nucleus, plastid	87.1	86.17
AT5G24655.1	Thale cress	cytosol	82.8	83.7
Bra020466.1-P	Field mustard	nucleus	83.87	80.41
Bra017975.1-P	Field mustard	cytosol	72.04	69.07
Bra017974.1-P	Field mustard	cytosol	62.37	67.44
Solyc03g096780.1.1	Tomato	nucleus	45.16	37.17
PGSC0003DMT400001474	Potato	plastid	46.24	36.75
KRH53667	Soybean	cytosol, extracellular, nucleus	47.31	36.67
PGSC0003DMT400001476	Potato	plastid	44.09	36.61
Solyc03g096760.1.1	Tomato	plastid	44.09	36.61
PGSC0003DMT400001475	Potato	plastid	45.16	35.59
KRH64261	Soybean	nucleus	46.24	35.54
Solyc03g096770.1.1	Tomato	nucleus	43.01	34.78
PGSC0003DMT400069515	Potato	cytosol	41.94	34.51
Solyc06g072990.1.1	Tomato	cytosol, plastid	40.86	33.33
KRH16959	Soybean	nucleus	39.78	31.62
VIT_16s0098g00600.t01	Wine grape	cytosol, nucleus, plastid	45.16	30.66

Protein Annotations

EnsemblPlants:Bra009783.1	EnsemblPlants:Bra009783.1-P	EnsemblPlantsGene:Bra009783	GO:GO:0006950	GO:GO:0008150	GO:GO:0009987
GO:GO:0033554	ncoils:Coil	PANTHER:PTHR34283	PANTHER:PTHR34283:SF1	UniParc:UPI000253F1FE	UniProt:M4CZY6
MapMan:35.1	:	:	:	:	:

Description

AT5G24660 (E=1e-040) LSU2 | LSU2 (RESPONSE TO LOW SULFUR 2)

Coordinates

chrA06:-:17228339..17228620

Molecular Weight (calculated)

10585.5 Da

IEP (calculated)

4.421

GRAVY (calculated)

-0.606

Length

93 amino acids

Sequence
(BLAST)

1: MGKGGNLVTV AASEVEELRR KNGEMEKAVE EMRKEMLQLW RRTQVAEEAE ERLCSQLAEL EAESLDQARD YQSRILFLVN ELSRLSSSDL ASP

Best Arabidopsis Sequence Match ( AT5G24660.1 )
(BLAST)

1: MGKGGNYVTV AASEVDELRR KNGEMEKAVE EMKKEMLQLW RRTQVAEEAE ERLCSQLAEL EAESLDQARD YHSRIIFLMN ELSRLSSDSA SASP

Arabidopsis Description

LSU2Protein RESPONSE TO LOW SULFUR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR9]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.