Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY59823 | Canola | nucleus | 99.48 | 99.48 |
| AT1G54770.1 | Thale cress | nucleus | 71.35 | 72.49 |
| AT5G30495.2 | Thale cress | nucleus | 73.44 | 71.94 |
| PGSC0003DMT400069825 | Potato | nucleus | 61.46 | 61.14 |
| Solyc05g053220.2.1 | Tomato | nucleus | 61.46 | 61.14 |
| Os02t0730500-01 | Rice | nucleus, plastid | 53.65 | 52.82 |
| KRH27951 | Soybean | nucleus | 53.12 | 51.52 |
| TraesCS6B01G322000.1 | Wheat | plastid | 53.12 | 51.52 |
| TraesCS6D01G272800.1 | Wheat | nucleus | 53.12 | 51.26 |
| KRH16007 | Soybean | nucleus | 30.21 | 50.88 |
| KRH77516 | Soybean | endoplasmic reticulum | 52.6 | 50.75 |
| TraesCS6A01G291500.1 | Wheat | plastid | 52.6 | 50.75 |
| KRH16004 | Soybean | nucleus | 51.04 | 50.52 |
| GSMUA_Achr5P02030_001 | Banana | cytosol | 50.0 | 49.74 |
| EES05586 | Sorghum | plastid | 50.52 | 49.24 |
| Zm00001d017927_P001 | Maize | nucleus | 50.52 | 49.24 |
| HORVU6Hr1G072940.1 | Barley | mitochondrion, plastid | 53.12 | 38.64 |
| VIT_05s0020g00780.t01 | Wine grape | nucleus | 59.9 | 38.33 |
| Zm00001d051760_P001 | Maize | plastid | 48.96 | 32.75 |
| Zm00001d030306_P009 | Maize | cytosol | 17.19 | 22.0 |
| Zm00001d013738_P005 | Maize | mitochondrion | 17.71 | 20.12 |
| Zm00001d014233_P001 | Maize | nucleus, plastid | 17.71 | 12.36 |
Protein Annotations
Description
AT5G30495 (E=4e-065) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Fcf2 pre-rRNA processing (InterPro:IPR014810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54770.1); Has 218 Blast hits to 218 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 88; Fungi - 76; Plants - 26; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Coordinates
chrA09:+:2617476..2618537
Molecular Weight (calculated)
22194.8 Da
IEP (calculated)
10.772
GRAVY (calculated)
-1.080
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEVKPLIGL KWEPKLPSLA LDSKTGSSSS KVAESGSSLW TSKSELVDGL CLPPTDPKKV NKMMRKQLKD TTGSNWFDMP APTMTPELKR DLQLLKLRNV
101: MDPKKHYKRV ASSSKLAEKY FQAIIEPAQE YFDRVTKKNR KTTLAEDLVS DPKFSQYRKR KVREIEEKSR SNQDKKWKRK GSDSKKTKHR RH
101: MDPKKHYKRV ASSSKLAEKY FQAIIEPAQE YFDRVTKKNR KTTLAEDLVS DPKFSQYRKR KVREIEEKSR SNQDKKWKRK GSDSKKTKHR RH
001: MAETKPLIGL TWEPKLPGLS LDTKTCSTSS KRVESHESSS LWMSKSELVD GLCLPPNDPK KINKMIRKQI KDTTGSNWFD MPAPTMTPEL KRDLQLLKLR
101: TVMDPAVHYK KSVSRSKLAE KYFQIGTVIE PAEEFYGRLT KKNRKATLAD ELVSDPKVSQ YRKRKVKEIE EKSRAVTNKK WKKKGNQTTN KKQRRN
101: TVMDPAVHYK KSVSRSKLAE KYFQIGTVIE PAEEFYGRLT KKNRKATLAD ELVSDPKVSQ YRKRKVKEIE EKSRAVTNKK WKKKGNQTTN KKQRRN
Arabidopsis Description
Fcf2 pre-rRNA processing protein [Source:UniProtKB/TrEMBL;Acc:F4KCY1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.