Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G272800.1 | Wheat | nucleus | 98.48 | 97.99 |
| TraesCS6A01G291500.1 | Wheat | plastid | 97.47 | 96.98 |
| Os02t0730500-01 | Rice | nucleus, plastid | 81.31 | 82.56 |
| EES05586 | Sorghum | plastid | 81.31 | 81.73 |
| Zm00001d017927_P001 | Maize | nucleus | 79.29 | 79.7 |
| HORVU6Hr1G072940.1 | Barley | mitochondrion, plastid | 95.45 | 71.59 |
| GSMUA_Achr5P02030_001 | Banana | cytosol | 61.11 | 62.69 |
| Solyc05g053220.2.1 | Tomato | nucleus | 61.11 | 62.69 |
| PGSC0003DMT400069825 | Potato | nucleus | 60.61 | 62.18 |
| KRH16007 | Soybean | nucleus | 32.32 | 56.14 |
| AT1G54770.1 | Thale cress | nucleus | 52.53 | 55.03 |
| KRH77516 | Soybean | endoplasmic reticulum | 55.05 | 54.77 |
| KRH27951 | Soybean | nucleus | 54.55 | 54.55 |
| AT5G30495.2 | Thale cress | nucleus | 53.54 | 54.08 |
| Zm00001d051760_P001 | Maize | plastid | 77.27 | 53.31 |
| CDY59823 | Canola | nucleus | 51.52 | 53.12 |
| Bra036122.1-P | Field mustard | nucleus | 51.52 | 53.12 |
| CDY00016 | Canola | nucleus | 51.01 | 52.6 |
| KRH16004 | Soybean | nucleus | 50.51 | 51.55 |
| VIT_05s0020g00780.t01 | Wine grape | nucleus | 60.1 | 39.67 |
| Zm00001d030306_P009 | Maize | cytosol | 27.78 | 36.67 |
| Zm00001d013738_P005 | Maize | mitochondrion | 29.29 | 34.32 |
| Zm00001d014233_P001 | Maize | nucleus, plastid | 30.3 | 21.82 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G322000.1 | EnsemblPlantsGene:TraesCS6B01G322000 | InterPro:Fcf2 | PANTHER:PTHR21686 | PFAM:PF08698 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:570147929..570149648
Molecular Weight (calculated)
22366.1 Da
IEP (calculated)
11.088
GRAVY (calculated)
-0.923
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSSAAPIG LSWAPQLPSL AAAGGSKKGS APTPSIDAQE SLWKPSNELV DGLYVPPRDP RKVNKMARKN VKDTTGKGWF DMPAPSITPE LKKDLEILQL
101: RHVMDPKRHF KRSGKSKALP KYFQVGTVIE PASEFYSSRL TKHERKQTLV DELLSDQKLK NYRMRKVREI QVARTPGGNQ KWKNKGKQTF KRAKDRRK
101: RHVMDPKRHF KRSGKSKALP KYFQVGTVIE PASEFYSSRL TKHERKQTLV DELLSDQKLK NYRMRKVREI QVARTPGGNQ KWKNKGKQTF KRAKDRRK
001: MAETKPLIGL TWEPKLPGLS LDTKTCSTSS KRVESHESSS LWMSKSELVD GLCLPPNDPK KINKMIRKQI KDTTGSNWFD MPAPTMTPEL KRDLQLLKLR
101: TVMDPAVHYK KSVSRSKLAE KYFQIGTVIE PAEEFYGRLT KKNRKATLAD ELVSDPKVSQ YRKRKVKEIE EKSRAVTNKK WKKKGNQTTN KKQRRN
101: TVMDPAVHYK KSVSRSKLAE KYFQIGTVIE PAEEFYGRLT KKNRKATLAD ELVSDPKVSQ YRKRKVKEIE EKSRAVTNKK WKKKGNQTTN KKQRRN
Arabidopsis Description
Fcf2 pre-rRNA processing protein [Source:UniProtKB/TrEMBL;Acc:F4KCY1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.